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Mansouri, M., Dumont, B., & Destain, M. - F. (2013). Modeling and prediction of nonlinear environmental system using Bayesian methods. Computers and Electronics in Agriculture, 92, 16–31.
Abstract: An environmental dynamic system is usually modeled as a nonlinear system described by a set of nonlinear ODEs. A central challenge in computational modeling of environmental systems is the determination of the model parameters. In these cases, estimating these variables or parameters from other easily obtained measurements can be extremely useful. This work addresses the problem of monitoring and modeling a leaf area index and soil moisture model (LSM) using state estimation. The performances of various conventional and state-of-the-art state estimation techniques are compared when they are utilized to achieve this objective. These techniques include the extended Kalman filter (EKF), particle filter (PF), and the more recently developed technique variational filter (VF). Specifically, two comparative studies are performed. In the first comparative study, the state variables (the leaf-area index LAI, the volumetric water content of the soil layer 1, HUR1 and the volumetric water content of the soil layer 2, HUR2) are estimated from noisy measurements of these variables, and the various estimation techniques are compared by computing the estimation root mean square error (RMSE) with respect to the noise-free data. In the second comparative study, the state variables as well as the model parameters are simultaneously estimated. In this case, in addition to comparing the performances of the various state estimation techniques, the effect of number of estimated model parameters on the accuracy and convergence of these techniques are also assessed. The results of both comparative studies show that the PF provides a higher accuracy than the EKF, which is due to the limited ability of the EKF to handle highly nonlinear processes. The results also show that the VF provides a significant improvement over the PF because, unlike the PF which depends on the choice of sampling distribution used to estimate the posterior distribution, the VF yields an optimum choice of the sampling distribution, which also accounts for the observed data. The results of the second comparative study show that, for all techniques, estimating more model parameters affects the estimation accuracy as well as the convergence of the estimated states and parameters. However, the VF can still provide both convergence as well as accuracy related advantages over other estimation methods. (C) 2013 Elsevier B.V. All rights reserved.
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Kollas, C., Kersebaum, K. C., Nendel, C., Manevski, K., Müller, C., Palosuo, T., et al. (2015). Crop rotation modelling—A European model intercomparison. European Journal of Agronomy, 70, 98–111.
Abstract: • First model inter-comparison on crop rotations. • Continuous simulation of multi-year crop rotations yields outperformed single-year simulation. • Low accuracy of yield predictions in less commonly modelled crops such as potato, radish, grass vegetation. • Multi-model mean prediction was found to minimise the likely error arising from single-model predictions. • The representation of intermediate crops and carry-over effects in the models require further research efforts.
Diversification of crop rotations is considered an option to increase the resilience of European crop production under climate change. So far, however, many crop simulation studies have focused on predicting single crops in separate one-year simulations. Here, we compared the capability of fifteen crop growth simulation models to predict yields in crop rotations at five sites across Europe under minimal calibration. Crop rotations encompassed 301 seasons of ten crop types common to European agriculture and a diverse set of treatments (irrigation, fertilisation, CO2 concentration, soil types, tillage, residues, intermediate or catch crops). We found that the continuous simulation of multi-year crop rotations yielded results of slightly higher quality compared to the simulation of single years and single crops. Intermediate crops (oilseed radish and grass vegetation) were simulated less accurately than main crops (cereals). The majority of models performed better for the treatments of increased CO2 and nitrogen fertilisation than for irrigation and soil-related treatments. The yield simulation of the multi-model ensemble reduced the error compared to single-model simulations. The low degree of superiority of continuous simulations over single year simulation was caused by (a) insufficiently parameterised crops, which affect the performance of the following crop, and (b) the lack of growth-limiting water and/or nitrogen in the crop rotations under investigation. In order to achieve a sound representation of crop rotations, further research is required to synthesise existing knowledge of the physiology of intermediate crops and of carry-over effects from the preceding to the following crop, and to implement/improve the modelling of processes that condition these effects.
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Semenov, M. A., Pilkington-Bennett, S., & Calanca, P. (2013). Validation of ELPIS 1980-2010 baseline scenarios using the observed European Climate Assessment data set. Clim. Res., 57(1), 1–9.
Abstract: Local-scale daily climate scenarios are required for assessment of climate change impacts. ELPIS is a repository of local-scale climate scenarios for Europe, which are based on the LARS-WG weather generator and future projections from 2 multi-model ensembles, CMIP3 and EU-ENSEMBLES. In ELPIS, the site parameters for the 1980-2010 baseline scenarios were estimated by LARS-WG using daily weather from the European Crop Growth Monitoring System (CGMS) used in many European agricultural assessment studies. The objective of this paper was to compare ELPIS baseline scenarios with observed daily weather obtained independently from the European Climate Assessment (ECA) data set. Several statistical tests were used to compare distributions of climatic variables derived from ECA-observed daily weather and ELPIS-generated baseline scenarios. About 30% of selected sites have a difference in altitude of > 50 m compared with the CGMS grid-cell altitude that was selected to represent agricultural land within a grid-cell. Differences in altitude can explain significant Kolmogorov-Smirnov test (KS-test) results for distribution of daily temperature and in t-tests for temperature monthly means, because of the well-known negative correlation between temperature and elevation. For daily precipitation, the KS-test showed little difference between generated and observed data; however, the more sensitive t-test showed significant results for the sites where altitude differences were large. Approximately 11% of sites showed small positive or negative bias in monthly solar radiation, although 86% sites showed > 3 significant t-test results for monthly means. These results can be explained by differences in conversion of sunshine hours to solar radiation used in CGMS and LARS-WG. We conclude that, considering the limitations above, ELPIS baseline scenarios are suitable for agricultural impact assessments in Europe.
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Bernabucci, U., Biffani, S., Buggiotti, L., Vitali, A., Lacetera, N., & Nardone, A. (2014). The effects of heat stress in Italian Holstein dairy cattle. J. Dairy Sci., 97(1), 471–486.
Abstract: The data set for this study comprised 1,488,474 test-day records for milk, fat, and protein yields and fat and protein percentages from 191,012 first-, second-, and third-parity Holstein cows from 484 farms. Data were collected from 2001 through 2007 and merged with meteorological data from 35 weather stations. A linear model (M1) was used to estimate the effects of the temperature-humidity index (THI) on production traits. Least squares means from M1 were used to detect the THI thresholds for milk production in all parities by using a 2-phase linear regression procedure (M2). A multiple-trait repeatability test-model (M3) was used to estimate variance components for all traits and a dummy regression variable (t) was defined to estimate the production decline caused by heat stress. Additionally, the estimated variance components and M3 were used to estimate traditional and heat-tolerance breeding values (estimated breeding values, EBV) for milk yield and protein percentages at parity 1. An analysis of data (M2) indicated that the daily THI at which milk production started to decline for the 3 parities and traits ranged from 65 to 76. These THI values can be achieved with different temperature/humidity combinations with a range of temperatures from 21 to 36°C and relative humidity values from 5 to 95%. The highest negative effect of THI was observed 4 d before test day over the 3 parities for all traits. The negative effect of THI on production traits indicates that first-parity cows are less sensitive to heat stress than multiparous cows. Over the parities, the general additive genetic variance decreased for protein content and increased for milk yield and fat and protein yield. Additive genetic variance for heat tolerance showed an increase from the first to third parity for milk, protein, and fat yield, and for protein percentage. Genetic correlations between general and heat stress effects were all unfavorable (from -0.24 to -0.56). Three EBV per trait were calculated for each cow and bull (traditional EBV, traditional EBV estimated with the inclusion of THI covariate effect, and heat tolerance EBV) and the rankings of EBV for 283 bulls born after 1985 with at least 50 daughters were compared. When THI was included in the model, the ranking for 17 and 32 bulls changed for milk yield and protein percentage, respectively. The heat tolerance genetic component is not negligible, suggesting that heat tolerance selection should be included in the selection objectives.
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Bulak, P., Walkiewicz, A., & Brzezińska, M. (2014). Plant growth regulators-assisted phytoextraction. Biol. Plant., 58(1), 1–8.
Abstract: Plant growth regulators (PRG)-assisted phytoremediation is a technique that could enhance the yield of heavy metal accumulation in plant tissues. So far, a small number of experiments have helped identify three groups of plant hormones that may be useful for this purpose: auxins, cytokinins, and gibberellins. Studies have shown that these hormones positively affect the degree of accumulation of metallic impurities and improve the growth and stress resistance of plants. This review summarizes the present knowledge about PGRs’ impact on phytoextraction yield.
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