toggle visibility Search & Display Options

Select All    Deselect All
 |   | 
Details
   print
  Records Links
Author De Swaef, T.; Bellocchi, G.; Aper, J.; Lootens, P.; Roldan-Ruiz, I. doi  openurl
  Title Use of identifiability analysis in designing phenotyping experiments for modelling forage production and quality Type Journal Article
  Year 2019 Publication Journal of Experimental Botany Abbreviated Journal J. Experim. Bot.  
  Volume 70 Issue (down) 9 Pages 2587-2604  
  Keywords Breeding; grassland modelling; identifiability analysis; perennial; ryegrass; phenotyping; sensitivity analysis; pasture simulation-model; practical identifiability; crop; water; parameters; systems; carbon; uncertainty; sensitivity; emissions  
  Abstract Agricultural systems models are complex and tend to be over-parameterized with respect to observational datasets. Practical identifiability analysis based on local sensitivity analysis has proved effective in investigating identifiable parameter sets in environmental models, but has not been applied to agricultural systems models. Here, we demonstrate that identifiability analysis improves experimental design to ensure independent parameter estimation for yield and quality outputs of a complex grassland model. The Pasture Simulation model (PaSim) was used to demonstrate the effectiveness of practical identifiability analysis in designing experiments and measurement protocols within phe-notyping experiments with perennial ryegrass. Virtual experiments were designed combining three factors: frequency of measurements, duration of the experiment. and location of trials. Our results demonstrate that (i) PaSim provides sufficient detail in terms of simulating biomass yield and quality of perennial ryegrass for use in breeding, (ii) typical breeding trials are insufficient to parameterize all influential parameters, (iii) the frequency of measurements is more important than the number of growing seasons to improve the identifiability of PaSim parameters, and (iv) identifiability analysis provides a sound approach for optimizing the design of multi-location trials. Practical identifiability analysis can play an important role in ensuring proper exploitation of phenotypic data and cost-effective multi-location experimental designs. Considering the growing importance of simulation models, this study supports the design of experiments and measurement protocols in the phenotyping networks that have recently been organized.  
  Address 2020-02-14  
  Corporate Author Thesis  
  Publisher Place of Publication Editor  
  Language English Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 0022-0957 ISBN Medium Article  
  Area Expedition Conference  
  Notes LiveM, ft_macsur Approved no  
  Call Number MA @ admin @ Serial 5231  
Permanent link to this record
 

 
Author Pulina, A.; Lai, R.; Salis, L.; Seddaiu, G.; Roggero, P.P.; Bellocchi, G. url  doi
openurl 
  Title Modelling pasture production and soil temperature, water and carbon fluxes in Mediterranean grassland systems with the Pasture Simulation Model Type Journal Article
  Year 2018 Publication Grass and Forage Science Abbreviated Journal Grass Forage Sci.  
  Volume 73 Issue (down) 2 Pages 272-283  
  Keywords grassland production; Mediterranean pastures; model calibration; PaSim; sheep grazing systems; soil respiration  
  Abstract Grasslands play important roles in agricultural production and provide a range of ecosystem services. Modelling can be a valuable adjunct to experimental research in order to improve the knowledge and assess the impact of management practices in grassland systems. In this study, the PaSim model was assessed for its ability to simulate plant biomass production, soil temperature, water content, and total and heterotrophic soil respiration in Mediterranean grasslands. The study site was the extensively managed sheep grazing system at the Berchidda‐Monti Observatory (Sardinia, Italy), from which two data sets were derived for model calibration and validation respectively. A new model parameterization was derived for Mediterranean conditions from a set of eco‐physiological parameters. With the exception of heterotrophic respiration (Rh), for which modelling efficiency (EF) values were negative, the model outputs were in agreement with observations (e.g., EF ranging from ~0.2 for total soil respiration to ~0.7 for soil temperature). These results support the effectiveness of PaSim to simulate C cycle components in Mediterranean grasslands. The study also highlights the need of further model development to provide better representation of the seasonal dynamics of Mediterranean annual species‐rich grasslands and associated peculiar Rh features, for which the modelling is only implicitly being undertaken by the current PaSim release.  
  Address  
  Corporate Author Thesis  
  Publisher Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium article  
  Area LiveM Expedition Conference  
  Notes LiveM, ft_macsur Approved no  
  Call Number MA @ admin @ Serial 4973  
Permanent link to this record
 

 
Author Sándor, R.; Barcza, Z.; Hidy, D.; Lellei-Kovács, E.; Ma, S.; Bellocchi, G. url  doi
openurl 
  Title Modelling of grassland fluxes in Europe: evaluation of two biogeochemical models Type Journal Article
  Year 2016 Publication Agriculture, Ecosystems and Environment Abbreviated Journal Agric. Ecosyst. Environ.  
  Volume 215 Issue (down) Pages 1-19  
  Keywords carbon-water fluxes; climate change; grasslands; model comparison; net ecosystem exchange; terrestrial carbon balance; pasture simulation-model; climate-change; nitrous-oxide; land-use; co2; photosynthesis; responses; water  
  Abstract Two independently developed simulation models – the grassland-specific PaSim and the biome-generic Biome-BGC MuSo (BBGC MuSo) – linking climate, soil, vegetation and management to ecosystem biogeochemical cycles were compared in a simulation of carbon (C) and water fluxes. The results were assessed against eddy-covariance flux data from five observational grassland sites representing a range of conditions in Europe: Grillenburg in Germany, Laqueuille in France with both extensive and intensive management, Monte Bondone in Italy and Oensingen in Switzerland. Model comparison (after calibration) gave substantial agreement, the performances being marginal to acceptable for weekly-aggregated gross primary production and ecosystem respiration (R-2 similar to 0.66 – 0.91), weekly evapotranspiration (R-2 similar to 0.78 – 0.94), soil water content in the topsoil (R-2 similar to 0.1 -0.7) and soil temperature (R-2 similar to 0.88 – 0.96). The bias was limited to the range -13 to 9 g C m(-2) week(-1) for C fluxes (-11 to 8 g C m(-2) week(-1) in case of BBGC MuSo, and -13 to 9 g C m(-2) week(-1) in case of PaSim) and -4 to 6 mm week for water fluxes (with BBGC MuSo providing somewhat higher estimates than PaSim), but some higher relative root mean square errors indicate low accuracy for prediction, especially for net ecosystem exchange The sensitivity of simulated outputs to changes in atmospheric carbon dioxide concentration ([CO2]), temperature and precipitation indicate, with certain agreement between the two models, that C outcomes are dominated by [CO2] and temperature gradients, and are less due to precipitation. ET rates decrease with increasing [CO2] in PaSim (consistent with experimental knowledge), while lack of appropriate stomatal response could be a limit in BBGC MuSo responsiveness. Results of the study indicate that some of the errors might be related to the improper representation of soil water content and soil temperature. Improvement is needed in the model representations of soil processes (especially soil water balance) that strongly influence the biogeochemical cycles of managed and unmanaged grasslands. (C) 2015 Elsevier B.V. All rights reserved.  
  Address 2016-10-31  
  Corporate Author Thesis  
  Publisher Place of Publication Editor  
  Language English Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 0167-8809 ISBN Medium Article  
  Area Expedition Conference  
  Notes CropM, LiveM, ft_macsur Approved no  
  Call Number MA @ admin @ Serial 4808  
Permanent link to this record
 

 
Author Eza, U.; Shtiliyanova, A.; Borras, D.; Bellocchi, G.; Carrère, P.; Martin, R. url  doi
openurl 
  Title An open platform to assess vulnerabilities to climate change: An application to agricultural systems Type Journal Article
  Year 2015 Publication Ecological Informatics Abbreviated Journal Ecological Informatics  
  Volume 30 Issue (down) Pages 389-396  
  Keywords climate change; grasslands; modeling platform; vulnerability assessment; pasture simulation-model; software component; solar-radiation; crop production; change impacts; adaptation; indicator; makers  
  Abstract Numerous climate futures are now available from global climate models. Translation of climate data such as precipitation and temperatures into ecologically meaningful outputs for managers and planners is the next frontier. We describe a model-based open platform to assess vulnerabilities of agricultural systems to climate change on pixel-wise data. The platform includes a simulation modeling engine and is suited to work with NetCDF format of input and output files. In a case study covering a region (Auvergne) in the Massif Central of France, the platform is configured to characterize climate (occurrence of arid conditions in historical and projected climate records), soils and human management, and is then used to assess the vulnerability to climate change of grassland productivity (downscaled to a fine scale). We demonstrate how using climate time series, and process-based simulations vulnerabilities can be defined at fine spatial scales relevant to farmers and land managers, and can be incorporated into management frameworks. (C) 2015 Elsevier B.V. All rights reserved.  
  Address  
  Corporate Author Thesis  
  Publisher Place of Publication Editor  
  Language English Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 1574-9541 ISBN Medium Article  
  Area Expedition Conference  
  Notes CropM LiveM, ft_macsur Approved no  
  Call Number MA @ admin @ Serial 4708  
Permanent link to this record
 

 
Author Ben Touhami, H.; Bellocchi, G. url  doi
openurl 
  Title Bayesian calibration of the Pasture Simulation model (PaSim) to simulate European grasslands under water stress Type Journal Article
  Year 2015 Publication Ecological Informatics Abbreviated Journal Ecological Informatics  
  Volume 30 Issue (down) Pages 356-364  
  Keywords Bayesian calibration framework; Grasslands; Pasture Simulation model; (PaSim); integrated assessment models; chain monte-carlo; climate-change; computation; impacts; vulnerability; likelihoods; france  
  Abstract As modeling becomes a more widespread practice in the agro-environmental sciences, scientists need reliable tools to calibrate models against ever more complex and detailed data. We present a generic Bayesian computation framework for grassland simulation, which enables parameter estimation in the Bayesian formalism by using Monte Carlo approaches. We outline the underlying rationale, discuss the computational issues, and provide results from an application of the Pasture Simulation model (PaSim) to three European grasslands. The framework was suited to investigate the challenging problem of calibrating complex biophysical models to data from altered scenarios generated by precipitation reduction (water stress conditions). It was used to infer the parameters of manipulated grassland systems and to assess the gain in uncertainty reduction by updating parameter distributions using measurements of the output variables.  
  Address  
  Corporate Author Thesis  
  Publisher Place of Publication Editor  
  Language English Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 1574-9541 ISBN Medium Article  
  Area Expedition Conference  
  Notes CropM, LiveM, ft_macsur Approved no  
  Call Number MA @ admin @ Serial 4697  
Permanent link to this record
Select All    Deselect All
 |   | 
Details
   print

Save Citations:
Export Records: