Records |
Author |
Stefańczyk, E.; Sobkowiak, S.; Brylińska, M.; Śliwka, J. |
Title |
Diversity of Fusarium spp. associated with dry rot of potato tubers in Poland |
Type |
Journal Article |
Year |
2016 |
Publication |
European Journal of Plant Pathology |
Abbreviated Journal |
Eur. J. Plant Pathol. |
Volume |
|
Issue |
|
Pages |
|
Keywords |
ITS; mycotoxin; pathogenicity; Solanum tuberosum; tef-1α; β-tubulin; sequence data; Trichothecenes; identification; fungus; pathogenicity; temperature; sensitivity; zearalenone; strains; disease |
Abstract |
Fusarium spp. belong to the division Ascomycota and cause important plant diseases; these fungi may contaminate food products with mycotoxins, endangering human and animal health. Several Fusarium spp. have been associated with potato dry rot. The most frequent and devastating of these species are F. sambucinum, F. solani and F. oxysporum, depending on the geographic location and the season. Samples of potato tubers with dry rot symptoms were collected, and their putative fungal isolates were identified as Fusarium species using partial nucleotide sequences of the internal transcribed spacer, translation elongation factor 1-α and β-tubulin genes. Among 149 isolates, 12 species were identified. F. oxysporum was the most frequent (45 % of the isolates), followed by F. avenaceum (12.1 %), F. solani (10.7 %) and F. sambucinum (7.4 %). Phylogenetic analyses confirmed the species identifications and revealed a high diversity of F. solani and a low diversity of F. oxysporum. Potential producers of zearalenone and trichothecenes were identified within the obtained isolates using PCR markers. Isolates that were pathogenic to potatoes in laboratory tests were found in four species: F. sambucinum, F. avenaceum, F. culmorum, and F. graminearum. The effects of increased temperature and mixed inoculum on the pathogenicities of chosen species were evaluated. This study adds 434 potato-derived Fusarium sequences to the NCBI GenBank database and demonstrates that the list of Fusarium species and mycotoxins present in potato tubers may be richer than previously believed, regardless of whether these species cause dry rot or live as saprophytes. |
Address |
|
Corporate Author |
|
Thesis |
|
Publisher |
|
Place of Publication |
|
Editor |
|
Language |
English |
Summary Language |
|
Original Title |
|
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
Series Volume |
|
Series Issue |
|
Edition |
|
ISSN |
0929-1873 1573-8469 |
ISBN |
|
Medium |
Article |
Area |
|
Expedition |
|
Conference |
|
Notes |
CropM, ft_macsur |
Approved |
no |
Call Number |
MA @ admin @ |
Serial |
4721 |
Permanent link to this record |
|
|
|
Author |
Rötter, R.P.; Palosuo, T.; Kersebaum, K.C.; Angulo, C.; Bindi, M.; Ewert, F.; Ferrise, R.; Hlavinka, P.; Moriondo, M.; Nendel, C.; Olesen, J.E.; Patil, R.H.; Ruget, F.; Takác, J.; Trnka, M. |
Title |
Simulation of spring barley yield in different climatic zones of Northern and Central Europe: A comparison of nine crop models |
Type |
Journal Article |
Year |
2012 |
Publication |
Field Crops Research |
Abbreviated Journal |
Field Crops Research |
Volume |
133 |
Issue |
|
Pages |
23-36 |
Keywords |
climate; crop growth simulation; model comparison; spring barley; yield variability; uncertainty; change impacts; nitrogen dynamics; high-temperature; soil-moisture; elevated co2; ceres-wheat; data set; growth; drought; sensitivity |
Abstract |
In this study, the performance of nine widely used and accessible crop growth simulation models (APES-ACE, CROPSYST, DAISY, DSSAT-CERES, FASSET, HERMES, MONICA, STICS and WOFOST) was compared during 44 growing seasons of spring barley (Hordeum vulgare L) at seven sites in Northern and Central Europe. The aims of this model comparison were to examine how different process-based crop models perform at multiple sites across Europe when applied with minimal information for model calibration of spring barley at field scale, whether individual models perform better than the multi-model mean, and what the uncertainty ranges are in simulated grain yields. The reasons for differences among the models and how results for barley compare to winter wheat are discussed. Regarding yield estimation, best performing based on the root mean square error (RMSE) were models HERMES, MONICA and WOFOST with lowest values of 1124, 1282 and 1325 (kg ha(-1)), respectively. Applying the index of agreement (IA), models WOFOST, DAISY and HERMES scored best having highest values (0.632, 0.631 and 0.585, respectively). Most models systematically underestimated yields, whereby CROPSYST showed the highest deviation as indicated by the mean bias error (MBE) (-1159 kg ha(-1)). While the wide range of simulated yields across all sites and years shows the high uncertainties in model estimates with only restricted calibration, mean predictions from the nine models agreed well with observations. Results of this paper also show that models that were more accurate in predicting phenology were not necessarily the ones better estimating grain yields. Total above-ground biomass estimates often did not follow the patterns of grain yield estimates and, thus, harvest indices were also different. Estimates of soil moisture dynamics varied greatly. In comparison, even though the growing cycle for winter wheat is several months longer than for spring barley, using RMSE and IA as indicators, models performed slightly, but not significantly, better in predicting wheat yields. Errors in reproducing crop phenology were similar, which in conjunction with the shorter growth cycle of barley has higher effects on accuracy in yield prediction. (C) 2012 Elsevier B.V. All rights reserved. |
Address |
2016-10-31 |
Corporate Author |
|
Thesis |
|
Publisher |
|
Place of Publication |
|
Editor |
|
Language |
English |
Summary Language |
|
Original Title |
|
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
Series Volume |
|
Series Issue |
|
Edition |
|
ISSN |
0378-4290 |
ISBN |
|
Medium |
Article |
Area |
|
Expedition |
|
Conference |
|
Notes |
CropM, ftnotmacsur |
Approved |
no |
Call Number |
MA @ admin @ |
Serial |
4803 |
Permanent link to this record |
|
|
|
Author |
Cammarano, D.; Rötter, R.P.; Asseng, S.; Ewert, F.; Wallach, D.; Martre, P.; Hatfield, J.L.; Jones, J.W.; Rosenzweig, C.; Ruane, A.C.; Boote, K.J.; Thorburn, P.J.; Kersebaum, K.C.; Aggarwal, P.K.; Angulo, C.; Basso, B.; Bertuzzi, P.; Biernath, C.; Brisson, N.; Challinor, A.J.; Doltra, J.; Gayler, S.; Goldberg, R.; Heng, L.; Hooker, J.E.; Hunt, L.A.; Ingwersen, J.; Izaurralde, R.C.; Müller, C.; Kumar, S.N.; Nendel, C.; O’Leary, G.; Olesen, J.E.; Osborne, T.M.; Priesack, E.; Ripoche, D.; Steduto, P.; Stöckle, C.O.; Stratonovitch, P.; Streck, T.; Supit, I.; Tao, F.; Travasso, M.; Waha, K.; White, J.W.; Wolf, J. |
Title |
Uncertainty of wheat water use: Simulated patterns and sensitivity to temperature and CO2 |
Type |
Journal Article |
Year |
2016 |
Publication |
Field Crops Research |
Abbreviated Journal |
Field Crops Research |
Volume |
198 |
Issue |
|
Pages |
80-92 |
Keywords |
Multi-model simulation; Transpiration efficiency; Water use; Uncertainty; Sensitivity |
Abstract |
Projected global warming and population growth will reduce future water availability for agriculture. Thus, it is essential to increase the efficiency in using water to ensure crop productivity. Quantifying crop water use (WU; i.e. actual evapotranspiration) is a critical step towards this goal. Here, sixteen wheat simulation models were used to quantify sources of model uncertainty and to estimate the relative changes and variability between models for simulated WU, water use efficiency (WUE, WU per unit of grain dry mass produced), transpiration efficiency (Teff, transpiration per kg of unit of grain yield dry mass produced), grain yield, crop transpiration and soil evaporation at increased temperatures and elevated atmospheric carbon dioxide concentrations ([CO2]). The greatest uncertainty in simulating water use, potential evapotranspiration, crop transpiration and soil evaporation was due to differences in how crop transpiration was modelled and accounted for 50% of the total variability among models. The simulation results for the sensitivity to temperature indicated that crop WU will decline with increasing temperature due to reduced growing seasons. The uncertainties in simulated crop WU, and in particularly due to uncertainties in simulating crop transpiration, were greater under conditions of increased temperatures and with high temperatures in combination with elevated atmospheric [CO2] concentrations. Hence the simulation of crop WU, and in particularly crop transpiration under higher temperature, needs to be improved and evaluated with field measurements before models can be used to simulate climate change impacts on future crop water demand. |
Address |
2016-10-31 |
Corporate Author |
|
Thesis |
|
Publisher |
|
Place of Publication |
|
Editor |
|
Language |
English |
Summary Language |
|
Original Title |
|
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
Series Volume |
|
Series Issue |
|
Edition |
|
ISSN |
0378-4290 |
ISBN |
|
Medium |
Article |
Area |
|
Expedition |
|
Conference |
|
Notes |
CropM, ft_macsur |
Approved |
no |
Call Number |
MA @ admin @ |
Serial |
4786 |
Permanent link to this record |
|
|
|
Author |
Ruiz-Ramos, M.; Ferrise, R.; Rodriguez, A.; Lorite, I.J.; Bindi, M.; Carter, T.R.; Fronzek, S.; Palosuo, T.; Pirttioja, N.; Baranowski, P.; Buis, S.; Cammarano, D.; Chen, Y.; Dumont, B.; Ewert, F.; Gaiser, T.; Hlavinka, P.; Hoffmann, H.; Hoehn, J.G.; Jurecka, F.; Kersebaum, K.C.; Krzyszczak, J.; Lana, M.; Mechiche-Alami, A.; Minet, J.; Montesino, M.; Nendel, C.; Porter, J.R.; Ruget, F.; Semenov, M.A.; Steinmetz, Z.; Stratonovitch, P.; Supit, I.; Tao, F.; Trnka, M.; de Wit, A.; Roetter, R.P. |
Title |
Adaptation response surfaces for managing wheat under perturbed climate and CO2 in a Mediterranean environment |
Type |
Journal Article |
Year |
2018 |
Publication |
Agricultural Systems |
Abbreviated Journal |
Agric. Syst. |
Volume |
159 |
Issue |
|
Pages |
260-274 |
Keywords |
Wheat adaptation; Sensitivity analysis; Crop model ensemble; Rainfed, Mediterranean cropping system; AOCK concept; Iberian Peninsula; Simulation-Model; Change Impacts; Crop; Uncertainty; Ensemble; Europe; Yield; Productivity; Irrigation |
Abstract |
Adaptation of crops to climate change has to be addressed locally due to the variability of soil, climate and the specific socio-economic settings influencing farm management decisions. Adaptation of rainfed cropping systems in the Mediterranean is especially challenging due to the projected decline in precipitation in the coming decades, which will increase the risk of droughts. Methods that can help explore uncertainties in climate projections and crop modelling, such as impact response surfaces (IRSs) and ensemble modelling, can then be valuable for identifying effective adaptations. Here, an ensemble of 17 crop models was used to simulate a total of 54 adaptation options for rainfed winter wheat (Triticum aestivum) at Lleida (NE Spain). To support the ensemble building, an ex post quality check of model simulations based on several criteria was performed. Those criteria were based on the “According to Our Current Knowledge” (AOCK) concept, which has been formalized here. Adaptations were based on changes in cultivars and management regarding phenology, vernalization, sowing date and irrigation. The effects of adaptation options under changed precipitation (P), temperature (T.),[CO2] and soil type were analysed by constructing response surfaces, which we termed, in accordance with their specific purpose, adaptation response surfaces (ARSs). These were created to assess the effect of adaptations through a range of plausible P, T and [CO2] perturbations. The results indicated that impacts of altered climate were predominantly negative. No single adaptation was capable of overcoming the detrimental effect of the complex interactions imposed by the P, T and [CO2] perturbations except for supplementary irrigation (sI), which reduced the potential impacts under most of the perturbations. Yet, a combination of adaptations for dealing with climate change demonstrated that effective adaptation is possible at Lleida. Combinations based on a cultivar without vernalization requirements showed good and wide adaptation potential. Few combined adaptation options performed well under rainfed conditions. However, a single sI was sufficient to develop a high adaptation potential, including options mainly based on spring wheat, current cycle duration and early sowing date. Depending on local environment (e.g. soil type), many of these adaptations can maintain current yield levels under moderate changes in T and P, and some also under strong changes. We conclude that ARSs can offer a useful tool for supporting planning of field level adaptation under conditions of high uncertainty. (C) 2017 Elsevier Ltd. All rights reserved. |
Address |
2018-01-25 |
Corporate Author |
|
Thesis |
|
Publisher |
|
Place of Publication |
|
Editor |
|
Language |
English |
Summary Language |
|
Original Title |
|
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
Series Volume |
|
Series Issue |
|
Edition |
|
ISSN |
0308-521x |
ISBN |
|
Medium |
|
Area |
|
Expedition |
|
Conference |
|
Notes |
CropM, ft_macsur |
Approved |
no |
Call Number |
MA @ admin @ |
Serial |
5184 |
Permanent link to this record |
|
|
|
Author |
Fronzek, S.; Pirttioja, N.; Carter, T.R.; Bindi, M.; Hoffmann, H.; Palosuo, T.; Ruiz-Ramos, M.; Tao, F.; Trnka, M.; Acutis, M.; Asseng, S.; Baranowski, P.; Basso, B.; Bodin, P.; Buis, S.; Cammarano, D.; Deligios, P.; Destain, M.-F.; Dumont, B.; Ewert, F.; Ferrise, R.; Francois, L.; Gaiser, T.; Hlavinka, P.; Jacquemin, I.; Kersebaum, K.C.; Kollas, C.; Krzyszczaki, J.; Lorite, I.J.; Minet, J.; Ines Minguez, M.; Montesino, M.; Moriondo, M.; Mueller, C.; Nendel, C.; Ozturk, I.; Perego, A.; Rodriguez, A.; Ruane, A.C.; Ruget, F.; Sanna, M.; Semenov, M.A.; Slawinski, C.; Stratonovitch, P.; Supit, I.; Waha, K.; Wang, E.; Wu, L.; Zhao, Z.; Rotter, R.P. |
Title |
Classifying multi-model wheat yield impact response surfaces showing sensitivity to temperature and precipitation change |
Type |
Journal Article |
Year |
2018 |
Publication |
Agricultural Systems |
Abbreviated Journal |
Agric. Syst. |
Volume |
159 |
Issue |
|
Pages |
209-224 |
Keywords |
Classification; Climate change; Crop model; Ensemble; Sensitivity analysis; Wheat; Climate-Change; Crop Models; Probabilistic Assessment; Simulating; Impacts; British Catchments; Uncertainty; Europe; Productivity; Calibration; Adaptation |
Abstract |
Crop growth simulation models can differ greatly in their treatment of key processes and hence in their response to environmental conditions. Here, we used an ensemble of 26 process-based wheat models applied at sites across a European transect to compare their sensitivity to changes in temperature (-2 to +9 degrees C) and precipitation (-50 to +50%). Model results were analysed by plotting them as impact response surfaces (IRSs), classifying the IRS patterns of individual model simulations, describing these classes and analysing factors that may explain the major differences in model responses. The model ensemble was used to simulate yields of winter and spring wheat at four sites in Finland, Germany and Spain. Results were plotted as IRSs that show changes in yields relative to the baseline with respect to temperature and precipitation. IRSs of 30-year means and selected extreme years were classified using two approaches describing their pattern. The expert diagnostic approach (EDA) combines two aspects of IRS patterns: location of the maximum yield (nine classes) and strength of the yield response with respect to climate (four classes), resulting in a total of 36 combined classes defined using criteria pre-specified by experts. The statistical diagnostic approach (SDA) groups IRSs by comparing their pattern and magnitude, without attempting to interpret these features. It applies a hierarchical clustering method, grouping response patterns using a distance metric that combines the spatial correlation and Euclidian distance between IRS pairs. The two approaches were used to investigate whether different patterns of yield response could be related to different properties of the crop models, specifically their genealogy, calibration and process description. Although no single model property across a large model ensemble was found to explain the integrated yield response to temperature and precipitation perturbations, the application of the EDA and SDA approaches revealed their capability to distinguish: (i) stronger yield responses to precipitation for winter wheat than spring wheat; (ii) differing strengths of response to climate changes for years with anomalous weather conditions compared to period-average conditions; (iii) the influence of site conditions on yield patterns; (iv) similarities in IRS patterns among models with related genealogy; (v) similarities in IRS patterns for models with simpler process descriptions of root growth and water uptake compared to those with more complex descriptions; and (vi) a closer correspondence of IRS patterns in models using partitioning schemes to represent yield formation than in those using a harvest index. Such results can inform future crop modelling studies that seek to exploit the diversity of multi-model ensembles, by distinguishing ensemble members that span a wide range of responses as well as those that display implausible behaviour or strong mutual similarities. |
Address |
2018-01-25 |
Corporate Author |
|
Thesis |
|
Publisher |
|
Place of Publication |
|
Editor |
|
Language |
English |
Summary Language |
|
Original Title |
|
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
Series Volume |
|
Series Issue |
|
Edition |
|
ISSN |
0308-521x |
ISBN |
|
Medium |
|
Area |
|
Expedition |
|
Conference |
|
Notes |
CropM, ft_macsur |
Approved |
no |
Call Number |
MA @ admin @ |
Serial |
5186 |
Permanent link to this record |