Records |
Author |
De Swaef, T.; Bellocchi, G.; Aper, J.; Lootens, P.; Roldan-Ruiz, I. |
Title |
Use of identifiability analysis in designing phenotyping experiments for modelling forage production and quality |
Type |
Journal Article |
Year |
2019 |
Publication |
Journal of Experimental Botany |
Abbreviated Journal |
J. Experim. Bot. |
Volume |
70 |
Issue |
9 |
Pages |
2587-2604 |
Keywords |
Breeding; grassland modelling; identifiability analysis; perennial; ryegrass; phenotyping; sensitivity analysis; pasture simulation-model; practical identifiability; crop; water; parameters; systems; carbon; uncertainty; sensitivity; emissions |
Abstract |
Agricultural systems models are complex and tend to be over-parameterized with respect to observational datasets. Practical identifiability analysis based on local sensitivity analysis has proved effective in investigating identifiable parameter sets in environmental models, but has not been applied to agricultural systems models. Here, we demonstrate that identifiability analysis improves experimental design to ensure independent parameter estimation for yield and quality outputs of a complex grassland model. The Pasture Simulation model (PaSim) was used to demonstrate the effectiveness of practical identifiability analysis in designing experiments and measurement protocols within phe-notyping experiments with perennial ryegrass. Virtual experiments were designed combining three factors: frequency of measurements, duration of the experiment. and location of trials. Our results demonstrate that (i) PaSim provides sufficient detail in terms of simulating biomass yield and quality of perennial ryegrass for use in breeding, (ii) typical breeding trials are insufficient to parameterize all influential parameters, (iii) the frequency of measurements is more important than the number of growing seasons to improve the identifiability of PaSim parameters, and (iv) identifiability analysis provides a sound approach for optimizing the design of multi-location trials. Practical identifiability analysis can play an important role in ensuring proper exploitation of phenotypic data and cost-effective multi-location experimental designs. Considering the growing importance of simulation models, this study supports the design of experiments and measurement protocols in the phenotyping networks that have recently been organized. |
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2020-02-14 |
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English |
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0022-0957 |
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LiveM, ft_macsur |
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no |
Call Number |
MA @ admin @ |
Serial |
5231 |
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Author |
Morales, I.; Diaz, B.M.; Hermoso De Mendoza, A.; Nebreda, M.; Fereres, A. |
Title |
The Development of an Economic Threshold for Nasonovia ribisnigri (Hemiptera: Aphididae) on Lettuce in Central Spain |
Type |
Journal Article |
Year |
2013 |
Publication |
Journal of Economic Entomology |
Abbreviated Journal |
J. Econ. Entomol. |
Volume |
106 |
Issue |
2 |
Pages |
891-898 |
Keywords |
Animals; Aphids/*physiology; Insect Control/economics/methods; Insecticides/administration & dosage; Lettuce/*growth & development; Nitriles/administration & dosage; Nonlinear Dynamics; Population Density; Pyrethrins/administration & dosage; Seasons; Spain |
Abstract |
This study reports economic thresholds for the lettuce aphid Nasonovia ribisnigri (Mosley), based exclusively on cosmetic damage, that is, presence or absence of aphids at harvest time. Field trials were conducted in La Poveda Experimental Farm, Madrid (Spain) during autumn (2004 and 2005) and spring (2005 and 2006). Plants were arranged in plots and just before the formation of lettuce hearts they were infested with different densities of N. ribisnigri. Two days later, half of each plot was treated with tau-fluvalinate (Klartan24AF) and the other half remained as an untreated control. Economic thresholds were obtained from nonlinear regressions calculated between the percentage of commercial plants at the end of the crop cycle for both, treated and untreated semiplots, and the different initial densities of N. ribisnigri per plant. Two criteria were used to consider a commercial lettuce plant: a conservative estimate (0 aphids/plant) and a lax one (< 5 aphids/plant). Thus, an economic threshold was established for each season and criterium. The economic thresholds that were obtained with the most and least conservative criteria were in spring 0.06 and 0.12 aphids per plant, and in autumn 0.07 and 0.13 aphids per plant, respectively. These results show that to avoid cosmetic damage, insecticide sprays are required when a very low aphid density is detected in lettuce seedlings soon after transplant. |
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0022-0493 |
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CropM |
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no |
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MA @ admin @ |
Serial |
4497 |
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Author |
Carabano, M.J.; Logar, B.; Bormann, J.; Minet, J.; Vanrobays, M.L.; Diaz, C.; Tychon, B.; Gengler, N.; Hammami, H. |
Title |
Modeling heat stress under different environmental conditions |
Type |
Journal Article |
Year |
2016 |
Publication |
Journal of Dairy Science |
Abbreviated Journal |
J. Dairy Sci. |
Volume |
99 |
Issue |
5 |
Pages |
3798-3814 |
Keywords |
Holstein cattle; heat stress model; climate change; somatic-cell score; lactating dairy-cows; dry-matter intake; milk-production; temperate climate; production traits; holstein cows; cattle; yield; weather; Agriculture; Food Science & Technology |
Abstract |
Renewed interest in heat stress effects on livestock productivity derives from climate change, which is expected to increase temperatures and the frequency of extreme weather events. This study aimed at evaluating the effect of temperature and humidity on milk production in highly selected dairy cattle populations across 3 European regions differing in climate and production systems to detect differences and similarities that can be used to optimize heat stress (HS) effect modeling. Milk, fat, and protein test day data from official milk recording for 1999 to 2010 in 4 Holstein populations located in the Walloon Region of Belgium (BEL), Luxembourg (LUX), Slovenia (SLO), and southern Spain (SPA) were merged with temperature and humidity data provided by the state meteorological agencies. After merging, the number of test day records/cows per trait ranged from 686,726/49,655 in SLO to 1,982,047/136,746 in BEL. Values for the daily average and maximum temperature-humidity index (THIavg and THImax) ranges for THIavg/THImax were largest in SLO (22-74/28-84) and shortest in SPA (39-76/46-83). Change point techniques were used to determine comfort thresholds, which differed across traits and climatic regions. Milk yield showed an inverted U-shaped pattern of response across the THI scale with a HS threshold around 73 THImax units. For fat and protein, thresholds were lower than for milk yield and were shifted around 6 THI units toward larger values in SPA compared with the other countries. Fat showed lower HS thresholds than protein traits in all countries. The traditional broken line model was compared with quadratic and cubic fits of the pattern of response in production to increasing heat loads. A cubic polynomial model allowing for individual variation in patterns of response and THIavg as heat load measure showed the best statistical features. Higher/lower producing animals showed less/more persistent production (quantity and quality) across the THI scale. The estimated correlations between comfort and THIavg values of 70 (which represents the upper end of the THIavg scale in BEL-LUX) were lower for BEL-LUX (0.70-0.80) than for SPA (0.83-0.85). Overall, animals producing in the more temperate climates and semi-extensive grazing systems of BEL and LUX showed HS at lower heat loads and more re-ranking across the THI scale than animals producing in the warmer climate and intensive indoor system of SPA. |
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0022-0302 |
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LiveM, ft_macsur |
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no |
Call Number |
MA @ admin @ |
Serial |
4745 |
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Author |
Vitali, A.; Felici, A.; Esposito, S.; Bernabucci, U.; Bertocchi, L.; Maresca, C.; Nardone, A.; Lacetera, N. |
Title |
The effect of heat waves on dairy cow mortality |
Type |
Journal Article |
Year |
2015 |
Publication |
Journal of Dairy Science |
Abbreviated Journal |
J. Dairy Sci. |
Volume |
98 |
Issue |
7 |
Pages |
4572-4579 |
Keywords |
Animal Welfare; Animals; Cattle; Cross-Over Studies; Female; Heat Stress Disorders/*mortality; *Hot Temperature; Italy/epidemiology; Logistic Models; *Movement; Retrospective Studies; Seasons; dairy cow; global warming; heat wave; mortality; welfare |
Abstract |
This study investigated the mortality of dairy cows during heat waves. Mortality data (46,610 cases) referred to dairy cows older than 24 mo that died on a farm from all causes from May 1 to September 30 during a 6-yr period (2002-2007). Weather data were obtained from 12 weather stations located in different areas of Italy. Heat waves were defined for each weather station as a period of at least 3 consecutive days, from May 1 to September 30 (2002-2007), when the daily maximum temperature exceeded the 90th percentile of the reference distribution (1971-2000). Summer days were classified as days in heat wave (HW) or not in heat wave (nHW). Days in HW were numbered to evaluate the relationship between mortality and length of the wave. Finally, the first 3 nHW days after the end of a heat wave were also considered to account for potential prolonged effects. The mortality risk was evaluated using a case-crossover design. A conditional logistic regression model was used to calculate odds ratio and 95% confidence interval for mortality recorded in HW compared with that recorded in nHW days pooled and stratified by duration of exposure, age of cows, and month of occurrence. Dairy cows mortality was greater during HW compared with nHW days. Furthermore, compared with nHW days, the risk of mortality continued to be higher during the 3 d after the end of HW. Mortality increased with the length of the HW. Considering deaths stratified by age, cows up to 28 mo were not affected by HW, whereas all the other age categories of older cows (29-60, 61-96, and >96 mo) showed a greater mortality when exposed to HW. The risk of death during HW was higher in early summer months. In particular, the highest risk of mortality was observed during June HW. Present results strongly support the implementation of adaptation strategies which may limit heat stress-related impairment of animal welfare and economic losses in dairy cow farm during HW. |
Address |
2016-06-01 |
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0022-0302 |
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LiveM, ft_macsur |
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MA @ admin @ |
Serial |
4744 |
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Author |
Salo, T.J.; Palosuo, T.; Kersebaum, K.C.; Nendel, C.; Angulo, C.; Ewert, F.; Bindi, M.; Calanca, P.; Klein, T.; Moriondo, M.; Ferrise, R.; Olesen, J.E.; Patil, R.H.; Ruget, F.; Takáč, J.; Hlavinka, P.; Trnka, M.; Rötter, R.P. |
Title |
Comparing the performance of 11 crop simulation models in predicting yield response to nitrogen fertilization |
Type |
Journal Article |
Year |
2016 |
Publication |
Journal of Agricultural Science |
Abbreviated Journal |
J. Agric. Sci. |
Volume |
154 |
Issue |
7 |
Pages |
1218-1240 |
Keywords |
northern growing conditions; climate-change impacts; spring barley; systems simulation; farming systems; soil properties; winter-wheat; dynamics; growth; management |
Abstract |
Eleven widely used crop simulation models (APSIM, CERES, CROPSYST, COUP, DAISY, EPIC, FASSET, HERMES, MONICA, STICS and WOFOST) were tested using spring barley (Hordeum vulgare L.) data set under varying nitrogen (N) fertilizer rates from three experimental years in the boreal climate of Jokioinen, Finland. This is the largest standardized crop model inter-comparison under different levels of N supply to date. The models were calibrated using data from 2002 and 2008, of which 2008 included six N rates ranging from 0 to 150 kg N/ha. Calibration data consisted of weather, soil, phenology, leaf area index (LAI) and yield observations. The models were then tested against new data for 2009 and their performance was assessed and compared with both the two calibration years and the test year. For the calibration period, root mean square error between measurements and simulated grain dry matter yields ranged from 170 to 870 kg/ha. During the test year 2009, most models failed to accurately reproduce the observed low yield without N fertilizer as well as the steep yield response to N applications. The multi-model predictions were closer to observations than most single-model predictions, but multi-model mean could not correct systematic errors in model simulations. Variation in soil N mineralization and LAI development due to differences in weather not captured by the models most likely was the main reason for their unsatisfactory performance. This suggests the need for model improvement in soil N mineralization as a function of soil temperature and moisture. Furthermore, specific weather event impacts such as low temperatures after emergence in 2009, tending to enhance tillering, and a high precipitation event just before harvest in 2008, causing possible yield penalties, were not captured by any of the models compared in the current study. |
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0021-8596 1469-5146 |
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CropM, ft_macsur |
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MA @ admin @ |
Serial |
4713 |
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