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Van Oijen, M., & Höglind, M. (2016). Toward a Bayesian procedure for using process-based models in plant breeding, with application to ideotype design. Euphytica, 207(3), 627–643.
Abstract: Process-based grassland models (PBMs) simulate growth and development of vegetation over time. The models tend to have a large number of parameters that represent properties of the plants. To simulate different cultivars of the same species, different parameter values are required. Parameter differences may be interpreted as genetic variation for plant traits. Despite this natural connection between PBMs and plant genetics, there are only few examples of successful use of PBMs in plant breeding. Here we present a new procedure by which PBMs can help design ideotypes, i.e. virtual cultivars that optimally combine properties of existing cultivars. Ideotypes constitute selection targets for breeding. The procedure consists of four steps: (1) Bayesian calibration of model parameters using data from cultivar trials, (2) Estimating genetic variation for parameters from the combination of cultivar-specific calibrated parameter distributions, (3) Identifying parameter combinations that meet breeding objectives, (4) Translating model results to practice, i.e. interpreting parameters in terms of practical selection criteria. We show an application of the procedure to timothy (Phleum pratense L.) as grown in different regions of Norway.
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Höglind, M. (2014). Europeisk landbruk i et klima i endring (MACSUR)..
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Korhonen, P., Palosuo, T., Höglind, M., Persson, T., Oijen, M. V., Jégo, G., et al. (2016). Intercomparison of timothy models in northern countries.. Berlin (Germany).
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Höglind, M., & the partners of LiveM task L1.3. (2017). Bringing together grassland and farm scale modelling. Part 1. Characterizing grasslands in farm scale modelling (Vol. 10).
Abstract: This report provides an overview of how grasslands are represented in six different farmscale models represented in MACSUR. A survey was conducted, followed by a workshop in which modellers discussed the results of the survey, and identified research challenges and knowledge gaps. The workshop was attended by grassland as well as livestock specialists. The investigated models differed largely with respect to how grasslands were represented, e.g. as regards weather and management factors accounted for, spatial and temporal resolution, and output variables. All models had grassland modules that simulate DM yield and herbage N content (or crude protein (CP) content = N content x 6.25). Many models also simulate P content, whereas only one simulate K content. About half of the model simulate herbage energy value and/or herbage fibre content and fibre and/or dry matter digestibility. Critical input data required from grassland models to simulate ruminant productivity and GHG emissions at farm scale was identified by the workshop participants. The different types of input data required were ranked in order of importance as regards their influence on important system outputs. For simulation of ruminant productivity and GHG emissions, herbage DM yield was ranked as the most important input variable from grassland models, followed by CP content together with at least one variable describing herbage fibre characteristics. These findings suggest that work on improving the ability of the current grassland models with respect to simulation of fibre/energy should be prioritized in farm-scale modelling aiming at quantifying livestock production and GHG emissions under different management regimes and climate conditions. More work is also needed on model evaluation, a task that has not been prioritized yet for some models.
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Korhonen, P., Palosuo, T., Höglind, M., Persson, T., van Oijen, M., Jego, G., et al. (2016). Intercomparison of models for simulating timothy yield in Northern countries. The multiple roles of grassland in the European bioeconomy. General Meeting of the European Grassland Federation, 26. Trondheim, Norway.
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