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Author |
Van Oijen, M.; Höglind, M. |
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Title |
Toward a Bayesian procedure for using process-based models in plant breeding, with application to ideotype design |
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Journal Article |
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Year |
2016 |
Publication |
Euphytica |
Abbreviated Journal |
Euphytica |
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Volume |
207 |
Issue |
3 |
Pages  |
627-643 |
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Keywords |
BASGRA; cold tolerance; genotype-environment interaction; plant breeding; process-based modelling; yield stability; grassland productivity; timothy regrowth; climate-change; water-deficit; forest models; late blight; leaf-area; calibration; growth; tolerance |
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Abstract |
Process-based grassland models (PBMs) simulate growth and development of vegetation over time. The models tend to have a large number of parameters that represent properties of the plants. To simulate different cultivars of the same species, different parameter values are required. Parameter differences may be interpreted as genetic variation for plant traits. Despite this natural connection between PBMs and plant genetics, there are only few examples of successful use of PBMs in plant breeding. Here we present a new procedure by which PBMs can help design ideotypes, i.e. virtual cultivars that optimally combine properties of existing cultivars. Ideotypes constitute selection targets for breeding. The procedure consists of four steps: (1) Bayesian calibration of model parameters using data from cultivar trials, (2) Estimating genetic variation for parameters from the combination of cultivar-specific calibrated parameter distributions, (3) Identifying parameter combinations that meet breeding objectives, (4) Translating model results to practice, i.e. interpreting parameters in terms of practical selection criteria. We show an application of the procedure to timothy (Phleum pratense L.) as grown in different regions of Norway. |
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2016-10-31 |
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0014-2336 |
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CropM, ft_macsur |
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Call Number |
MA @ admin @ |
Serial |
4820 |
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Author |
Kim, Y.; Berger, S.; Kettering, J.; Tenhunen, J.; Haas, E.; Kiese, R. |
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Title |
Simulation of N2O emissions and nitrate leaching from plastic mulch radish cultivation with LandscapeDNDC |
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Journal Article |
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Year |
2014 |
Publication |
Ecological Research |
Abbreviated Journal |
Ecol. Res. |
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Volume |
29 |
Issue |
3 |
Pages |
441-454 |
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Keywords |
biogeochemical modeling; landscapedndc; N2O; nitrate leaching; plastic mulch; nitrous-oxide emissions; semiarid loess plateau; biogeochemical model; soil-erosion; no emissions; forest soils; dndc model; film mulch; china; field |
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Abstract |
Radish is one of the major dry field crops in Asia commonly grown with plastic mulch and high rates of N fertilization, and potentially harming the environment due to N2O emissions and nitrate leaching. Despite the widespread use of plastic mulch, biogeochemical models so far do not yet consider impacts of mulch on soil environmental conditions and biogeochemistry. In this study, we adapted and successfully tested the LandscapeDNDC model against field data by simulating crop growth, C and N turnover and associated N2O emissions as well as nitrate leaching for radish cultivation with plastic mulch and in conjunction with different rates of N fertilization (465-765 kg N ha(-1) year(-1)). Due to the sandy soil texture and monsoon climate, nitrate leaching with rates up to 350 kg N ha(-1) year(-1) was the dominant reason for overall low nitrogen use efficiency (32-43 %). Direct or indirect N2O emissions (calculated from simulated nitrate leaching rates and IPCC EFind = 0.0075) ranged between 2 and 3 kg N ha(-1) year(-1), thus contributing an equal amount to total field emissions of about 5 kg N ha(-1) year(-1). Based on our results, emission factors for direct N2O emissions ranged between 0.004 and 0.005. These values are only half of the IPCC default value (0.01), demonstrating the need of biogeochemical models for developing site and/or region specific EFs. Simulation results also revealed that changes in agricultural management by applying the fertilizer only to the rows would be an efficient mitigation strategy, effectively decreasing field nitrate leaching and N2O emissions by 50-60 %. |
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0912-3814 1440-1703 |
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CropM, ft_macsur |
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MA @ admin @ |
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4528 |
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Author |
Dass, P.; Müller, C.; Brovkin, V.; Cramer, W. |
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Title |
Can bioenergy cropping compensate high carbon emissions from large-scale deforestation of high latitudes |
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Journal Article |
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Year |
2013 |
Publication |
Earth System Dynamics |
Abbreviated Journal |
Earth System Dynamics |
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Volume |
4 |
Issue |
2 |
Pages |
409-424 |
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Keywords |
land-use change; global vegetation model; soil carbon; climate-change; surface albedo; cover changes; snow cover; remind-r; forest; productivity |
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Abstract |
Numerous studies have concluded that deforestation of the high latitudes result in a global cooling. This is mainly because of the increased albedo of deforested land which dominates over other biogeophysical and biogeochemical mechanisms in the energy balance. This dominance, however, may be due to an underestimation of the biogeochemical response, as carbon emissions are typically at or below the lower end of estimates. Here, we use the dynamic global vegetation model LPJmL for a better estimate of the carbon cycle under such large-scale deforestation. These studies are purely theoretical in order to understand the role of vegetation in the energy balance and the earth system. They must not be mistaken as possible mitigation options, because of the devastating effects on pristine ecosystems. For realistic assumptions of land suitability, the total emissions computed in this study are higher than that of previous studies assessing the effects of boreal deforestation. The warming due to biogeochemical effects ranges from 0.12 to 0.32 degrees C, depending on the climate sensitivity. Using LPJmL to assess the mitigation potential of bioenergy plantations in the suitable areas of the deforested region, we find that the global biophysical bioenergy potential is 68.1 +/- 5.6 EJ yr(-1) of primary energy at the end of the 21st century in the most plausible scenario. The avoided combustion of fossil fuels over the time frame of this experiment would lead to further cooling. However, since the carbon debt caused by the cumulative emissions is not repaid by the end of the 21st century, the global temperatures would increase by 0.04 to 0.11 degrees C. The carbon dynamics in the high latitudes especially with respect to permafrost dynamics and long-term carbon losses, require additional attention in the role for the Earth’s carbon and energy budget. |
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2190-4987 |
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MA @ admin @ |
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4486 |
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Author |
Walkiewicz, A.; Bulak, P.; Brzezinska, M.; Wnuk, E.; Bieganowski, A. |
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Title |
Methane oxidation in heavy metal contaminated Mollic Gleysol under oxic and hypoxic conditions |
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Journal Article |
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Year |
2016 |
Publication |
Environmental Pollution |
Abbreviated Journal |
Environ. Pollut. |
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213 |
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403-411 |
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Soil; Methane oxidation; CH4; Heavy metals; Oxygen status; Dehydrogenase; activity; methanotrophic bacteria; dehydrogenase-activity; potential activity; forest soils; responses; landfill; community; ch4; co2; bioremediation |
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Soils are the largest terrestrial sink for methane (CH4). However, heavy metals may exert toxicity to soil microorganisms, including methanotrophic bacteria. We tested the effect of lead (Pb), zinc (Zn) and nickel (Ni) on CH4 oxidation (1% v/v) and dehydrogenase activity, an index of the activity of the total soil microbial community in Mollic Gleysol soil in oxic and hypoxic conditions (oxia and hypoxia, 20% and 10% v/v O2, respectively). Metals were added in doses corresponding to the amounts permitted of Pb, Zn, Ni in agricultural soils (60, 120, 35 mg kg(-1), respectively), and half and double of these doses. Relatively low metal contents and O2 status reflect the conditions of most agricultural soils of temperate regions. Methane consumption showed high tolerance to heavy metals. The effect of O2 status was stronger than that of metals. CH4 consumption was enhanced under hypoxia, where both the start and the completion of the control and contaminated treatment were faster than under oxic conditions. Dehydrogenase activity, showed higher sensitivity to the contamination (except for low Ni dose), with a stronger effect of heavy metals, than that of the O2 status. |
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Newsletter July 2016 |
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0269-7491 |
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CropM, ft_macsur |
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MA @ admin @ |
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4771 |
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Author |
Dietrich, J.P.; Schmitz, C.; Lotze-Campen, H.; Popp, A.; Muller, C. |
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Title |
Forecasting technological change in agriculture-An endogenous implementation in a global, and use model |
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Journal Article |
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2014 |
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Technological Forecasting and Social Change |
Abbreviated Journal |
Technological Forecasting and Social Change |
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81 |
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236-249 |
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Technological change; Land use; Agricultural productivity; Land use; intensity; Research and development; land-use; research expenditures; productivity growth; impact; deforestation; forest; yield; Business & Economics; Public Administration |
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Technological change in agriculture plays a decisive role for meeting future demands for agricultural goods. However, up to now, agricultural sector models and models on land use change have used technological change as an exogenous input due to various information and data deficiencies. This paper provides a first attempt towards an endogenous implementation based on a measure of agricultural land use intensity. We relate this measure to empirical data on investments in technological change. Our estimated yield elasticity with respect to research investments is 029 and production costs per area increase linearly with an increasing yield level. Implemented in the global land use model MAgPIE (”Model of Agricultural Production and its Impact on the Environment”) this approach provides estimates of future yield growth. Highest future yield increases are required in Sub-Saharan Africa, the Middle East and South Asia. Our validation with FAO data for the period 1995-2005 indicates that the model behavior is in line with observations. By comparing two scenarios on forest conservation we show that protecting sensitive forest areas in the future is possible but requires substantial investments into technological change. (C) 2013 Elsevier Inc. All rights reserved. |
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2016-10-31 |
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0040-1625 |
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CropM |
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MA @ admin @ |
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4789 |
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