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Bernabucci, U., Biffani, S., Buggiotti, L., Vitali, A., Lacetera, N., & Nardone, A. (2014). The effects of heat stress in Italian Holstein dairy cattle. J. Dairy Sci., 97(1), 471–486.
Abstract: The data set for this study comprised 1,488,474 test-day records for milk, fat, and protein yields and fat and protein percentages from 191,012 first-, second-, and third-parity Holstein cows from 484 farms. Data were collected from 2001 through 2007 and merged with meteorological data from 35 weather stations. A linear model (M1) was used to estimate the effects of the temperature-humidity index (THI) on production traits. Least squares means from M1 were used to detect the THI thresholds for milk production in all parities by using a 2-phase linear regression procedure (M2). A multiple-trait repeatability test-model (M3) was used to estimate variance components for all traits and a dummy regression variable (t) was defined to estimate the production decline caused by heat stress. Additionally, the estimated variance components and M3 were used to estimate traditional and heat-tolerance breeding values (estimated breeding values, EBV) for milk yield and protein percentages at parity 1. An analysis of data (M2) indicated that the daily THI at which milk production started to decline for the 3 parities and traits ranged from 65 to 76. These THI values can be achieved with different temperature/humidity combinations with a range of temperatures from 21 to 36°C and relative humidity values from 5 to 95%. The highest negative effect of THI was observed 4 d before test day over the 3 parities for all traits. The negative effect of THI on production traits indicates that first-parity cows are less sensitive to heat stress than multiparous cows. Over the parities, the general additive genetic variance decreased for protein content and increased for milk yield and fat and protein yield. Additive genetic variance for heat tolerance showed an increase from the first to third parity for milk, protein, and fat yield, and for protein percentage. Genetic correlations between general and heat stress effects were all unfavorable (from -0.24 to -0.56). Three EBV per trait were calculated for each cow and bull (traditional EBV, traditional EBV estimated with the inclusion of THI covariate effect, and heat tolerance EBV) and the rankings of EBV for 283 bulls born after 1985 with at least 50 daughters were compared. When THI was included in the model, the ranking for 17 and 32 bulls changed for milk yield and protein percentage, respectively. The heat tolerance genetic component is not negligible, suggesting that heat tolerance selection should be included in the selection objectives.
Keywords: Animals; Breeding; Cattle; Dietary Fats/analysis; Dietary Proteins/analysis; Female; Genetic Variation; Heat Stress Disorders/*veterinary; *Hot Temperature; Humans; Humidity; *Lactation; Linear Models; Milk/chemistry; Parity; Phenotype; Weather; dairy cow; heritability; production trait; temperature-humidity index breaking point
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Semenov, M. A., Stratonovitch, P., Alghabari, F., & Gooding, M. J. (2014). Adapting wheat in Europe for climate change. J. Ceareal Sci., 59(3), 245–256.
Abstract: Increasing cereal yield is needed to meet the projected increased demand for world food supply of about 70% by 2050. Sirius, a process-based model for wheat, was used to estimate yield potential for wheat ideotypes optimized for future climatic projections for ten wheat growing areas of Europe. It was predicted that the detrimental effect of drought stress on yield would be decreased due to enhanced tailoring of phenology to future weather patterns, and due to genetic improvements in the response of photosynthesis and green leaf duration to water shortage. Yield advances could be made through extending maturation and thereby improve resource capture and partitioning. However the model predicted an increase in frequency of heat stress at meiosis and anthesis. Controlled environment experiments quantify the effects of heat and drought at booting and flowering on grain numbers and potential grain size. A current adaptation of wheat to areas of Europe with hotter and drier summers is a quicker maturation which helps to escape from excessive stress, but results in lower yields. To increase yield potential and to respond to climate change, increased tolerance to heat and drought stress should remain priorities for the genetic improvement of wheat.
Keywords: A, maximum area of flag leaf area; ABA, abscisic acid; CV, coefficient of variation; Crop improvement; Crop modelling; FC, field capacity; GMT, Greenwich mean time; GS, growth stage; Gf, grain filling duration; HI, harvest index; HSP, heat shock protein; Heat and drought tolerance; Impact assessment; LAI, leaf area index; Ph, phylochron; Pp, photoperiod response; Ru, root water uptake; S, duration of leaf senescence; SF, drought stress factor; Sirius; Wheat ideotype
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Strauss, F., Moltchanova, E., & Schmid, E. (2013). Spatially explicit modeling of long-term drought impacts on crop production in Austria. American Journal of Climate Change, 2(3), 1–11.
Abstract: Droughts have serious and widespread impacts on crop production with substantial economic losses. The frequency and severity of drought events may increase in the future due to climate change. We have developed three meteorological drought scenarios for Austria in the period 2008-2040. The scenarios are defined based on a dry day index which is combined with bootstrapping from an observed daily weather dataset of the period 1975-2007. The severity of long-term drought scenarios is characterized by lower annual and seasonal precipitation amounts as well as more sig- nificant temperature increases compared to the observations. The long-term impacts of the drought scenarios on Aus- trian crop production have been analyzed with the biophysical process model EPIC (Environmental Policy Integrated Climate). Our simulation outputs show that—for areas with historical mean annual precipitation sums below 850 mm— already slight increases in dryness result in significantly lower crop yields i.e. depending on the drought severity, be- tween 0.6% and 0.9% decreases in mean annual dry matter crop yields per 1.0% decrease in mean annual precipitation sums. The EPIC results of more severe droughts show that spring and summer precipitation may become a limiting factor in crop production even in regions with historical abundant precipitation.
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Mansouri, M., Dumont, B., & Destain, M. - F. (2013). Modeling and prediction of nonlinear environmental system using Bayesian methods. Computers and Electronics in Agriculture, 92, 16–31.
Abstract: An environmental dynamic system is usually modeled as a nonlinear system described by a set of nonlinear ODEs. A central challenge in computational modeling of environmental systems is the determination of the model parameters. In these cases, estimating these variables or parameters from other easily obtained measurements can be extremely useful. This work addresses the problem of monitoring and modeling a leaf area index and soil moisture model (LSM) using state estimation. The performances of various conventional and state-of-the-art state estimation techniques are compared when they are utilized to achieve this objective. These techniques include the extended Kalman filter (EKF), particle filter (PF), and the more recently developed technique variational filter (VF). Specifically, two comparative studies are performed. In the first comparative study, the state variables (the leaf-area index LAI, the volumetric water content of the soil layer 1, HUR1 and the volumetric water content of the soil layer 2, HUR2) are estimated from noisy measurements of these variables, and the various estimation techniques are compared by computing the estimation root mean square error (RMSE) with respect to the noise-free data. In the second comparative study, the state variables as well as the model parameters are simultaneously estimated. In this case, in addition to comparing the performances of the various state estimation techniques, the effect of number of estimated model parameters on the accuracy and convergence of these techniques are also assessed. The results of both comparative studies show that the PF provides a higher accuracy than the EKF, which is due to the limited ability of the EKF to handle highly nonlinear processes. The results also show that the VF provides a significant improvement over the PF because, unlike the PF which depends on the choice of sampling distribution used to estimate the posterior distribution, the VF yields an optimum choice of the sampling distribution, which also accounts for the observed data. The results of the second comparative study show that, for all techniques, estimating more model parameters affects the estimation accuracy as well as the convergence of the estimated states and parameters. However, the VF can still provide both convergence as well as accuracy related advantages over other estimation methods. (C) 2013 Elsevier B.V. All rights reserved.
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Jing, Q., Bélanger, G., Baron, V., Bonesmo, H., Virkajärvi, P., & Young, D. (2012). Regrowth simulation of the perennial grass timothy. Ecol. Model., 232, 64–77.
Abstract: Several process-based models for simulating the growth of perennial grasses have been developed but few include the simulation of regrowth. The model CATIMO simulates the primary growth of timothy (Phleum pratense L), an important perennial forage grass species in northern regions of Europe and North America. Our objective was to further develop the model CATIMO to simulate timothy regrowth using the concept of reserve-dependent growth. The performance of this modified CATIMO model in simulating leaf area index (LAI), biomass dry matter (DM) yield, and N uptake of regrowth was assessed with data from four independent field experiments in Norway, Finland, and western and eastern Canada using an approach that combines graphical comparison and statistical analysis. Biomass DM yield and N uptake of regrowth were predicted at the same accuracy as primary growth with linear regression coefficients of determination between measured and simulated values greater than 0.79, model simulation efficiencies greater than 0.78, and normalized root mean square errors (14-30% for biomass and 24-34% for N uptake) comparable with the coefficients of variation of measured data (1-21% for biomass and 1-25% for N uptake). The model satisfactorily simulated the regrowth LAI but only up to a value of about 4.0. The modified CATIMO model with its capacity to simulate regrowth provides a framework to simulate perennial grasses with multiple harvests, and to explore management options for sustainable grass production under different environmental conditions. Crown Copyright (C) 2012 Published by Elsevier B.V. All rights reserved.
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