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Author |
Meyer, P. |
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Title |
Epigenetic variation and environmental change |
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Journal Article |
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Year |
2015 |
Publication |
Journal of Experimental Botany |
Abbreviated Journal |
J. Experim. Bot. |
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Volume |
66 |
Issue |
12 |
Pages |
3541-3548 |
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Keywords |
DNA Methylation/genetics; DNA Transposable Elements/genetics; *Environment; *Epigenesis, Genetic; Plants/genetics; Stress, Physiological/genetics; Adaptation; DNA methylation; epigenetics; stress response |
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Abstract |
Environmental conditions can change the activity of plant genes via epigenetic effects that alter the competence of genetic information to be expressed. This may provide a powerful strategy for plants to adapt to environmental change. However, as epigenetic changes do not modify DNA sequences and are therefore reversible, only those epi-mutations that are transmitted through the germline can be expected to contribute to a long-term adaptive response. The major challenge for the investigation of epigenetic adaptation theories is therefore to identify genomic loci that undergo epigenetic changes in response to environmental conditions, which alter their expression in a heritable way and which improve the plant’s ability to adapt to the inducing conditions. This review focuses on the role of DNA methylation as a prominent epigenetic mark that controls chromatin conformation, and on its potential in mediating expression changes in response to environmental signals. |
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1460-2431 (Electronic) 0022-0957 (Linking) |
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Review |
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CropM |
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MA @ admin @ |
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4569 |
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Author |
Lessire, F.; Hornick, J.L.; Minet, J.; Dufrasne, I. |
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Title |
Rumination time, milk yield, milking frequency of grazing dairy cows milked by a mobile automatic system during mild heat stress |
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Journal Article |
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Year |
2015 |
Publication |
Advances in Animal Biosciences |
Abbreviated Journal |
Advances in Animal Biosciences |
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Volume |
6 |
Issue |
01 |
Pages |
12-14 |
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Keywords |
dairy; heat stress; THI; behaviour; milk yield |
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2040-4700 |
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LiveM, ft_macsur |
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MA @ admin @ |
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4570 |
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Author |
Minet, J.; Laloy, E.; Tychon, B.; François, L. |
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Title |
Bayesian inversions of a dynamic vegetation model at four European grassland sites |
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Journal Article |
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Year |
2015 |
Publication |
Biogeosciences |
Abbreviated Journal |
Biogeosciences |
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Volume |
12 |
Issue |
9 |
Pages |
2809-2829 |
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Keywords |
eddy-covariance data; terrestrial ecosystem model; bioclimatic affinity; groups; monte-carlo-simulation; dry-matter content; leaf-area; climate-change; stomatal conductance; parameter-estimation; plant |
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Eddy covariance data from four European grassland sites are used to probabilistically invert the CARAIB (CARbon Assimilation In the Biosphere) dynamic vegetation model (DVM) with 10 unknown parameters, using the DREAM((ZS)) (DiffeRential Evolution Adaptive Metropolis) Markov chain Monte Carlo (MCMC) sampler. We focus on comparing model inversions, considering both homoscedastic and heteroscedastic eddy covariance residual errors, with variances either fixed a priori or jointly inferred together with the model parameters. Agreements between measured and simulated data during calibration are comparable with previous studies, with root mean square errors (RMSEs) of simulated daily gross primary productivity (GPP), ecosystem respiration (RECO) and evapotranspiration (ET) ranging from 1.73 to 2.19, 1.04 to 1.56 g C m(-2) day(-1) and 0.50 to 1.28 mm day(-1), respectively. For the calibration period, using a homoscedastic eddy covariance residual error model resulted in a better agreement between measured and modelled data than using a heteroscedastic residual error model. However, a model validation experiment showed that CARAIB models calibrated considering heteroscedastic residual errors perform better. Posterior parameter distributions derived from using a heteroscedastic model of the residuals thus appear to be more robust. This is the case even though the classical linear heteroscedastic error model assumed herein did not fully remove heteroscedasticity of the GPP residuals. Despite the fact that the calibrated model is generally capable of fitting the data within measurement errors, systematic bias in the model simulations are observed. These are likely due to model inadequacies such as shortcomings in the photosynthesis modelling. Besides the residual error treatment, differences between model parameter posterior distributions among the four grassland sites are also investigated. It is shown that the marginal distributions of the specific leaf area and characteristic mortality time parameters can be explained by site-specific ecophysiological characteristics. |
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1726-4189 |
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CropM LiveM, ft_macsur |
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MA @ admin @ |
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4571 |
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Author |
Kersebaum, K.C.; Boote, K.J.; Jorgenson, J.S.; Nendel, C.; Bindi, M.; Frühauf, C.; Gaiser, T.; Hoogenboom, G.; Kollas, C.; Olesen, J.E.; Rötter, R.P.; Ruget, F.; Thorburn, P.J.; Trnka, M.; Wegehenkel, M. |
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Title |
Analysis and classification of data sets for calibration and validation of agro-ecosystem models |
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Journal Article |
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Year |
2015 |
Publication |
Environmental Modelling & Software |
Abbreviated Journal |
Env. Model. Softw. |
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72 |
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402-417 |
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Keywords |
field experiments; data quality; crop modelling; data requirement; minimum data; software; different climatic zones; soil-moisture sensors; spatial variability; nitrogen dynamics; crop models; systems simulation; wheat yields; elevated co2; growth; field |
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Experimental field data are used at different levels of complexity to calibrate, validate and improve agroecosystem models to enhance their reliability for regional impact assessment. A methodological framework and software are presented to evaluate and classify data sets into four classes regarding their suitability for different modelling purposes. Weighting of inputs and variables for testing was set from the aspect of crop modelling. The software allows users to adjust weights according to their specific requirements. Background information is given for the variables with respect to their relevance for modelling and possible uncertainties. Examples are given for data sets of the different classes. The framework helps to assemble high quality data bases, to select data from data bases according to modellers requirements and gives guidelines to experimentalists for experimental design and decide on the most effective measurements to improve the usefulness of their data for modelling, statistical analysis and data assimilation. (C) 2015 Elsevier Ltd. All rights reserved. |
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1364-8152 |
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CropM, ft_macsur |
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Call Number |
MA @ admin @ |
Serial |
4563 |
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Author |
Jabloun, M.; Schelde, K.; Tao, F.; Olesen, J.E. |
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Title |
Effect of temperature and precipitation on nitrate leaching from organic cereal cropping systems in Denmark |
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Journal Article |
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Year |
2015 |
Publication |
European Journal of Agronomy |
Abbreviated Journal |
European Journal of Agronomy |
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Volume |
62 |
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Pages |
55-64 |
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Keywords |
nitrogen; leaching; organic farming; wheat; barley; climate-change; catch crops; nitrogen mineralization; winter-wheat; arable crop; european agriculture; farming systems; spring barley; cover crops; soil |
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The effect of variation in seasonal temperature and precipitation on soil water nitrate (NO3-N) concentration and leaching from winter and spring cereals cropping systems was investigated over three consecutive four-year crop rotation cycles from 1997 to 2008 in an organic farming crop rotation experiment in Denmark. Three experimental sites, varying in climate and soil type from coarse sand to sandy loam, were investigated. The experiment included experimental treatments with different rotations, manure rate and cover crop, and soil nitrate concentrations was monitored using suction cups. The effects of climate, soil and management were examined in a linear mixed model, and only parameters with significant effect (P < 0.05) were included in the final model. The model explained 61% and 47% of the variation in the square root transform of flow-weighted annual NO3-N concentration for winter and spring cereals, respectively, and 68% and 77% of the variation in the square root transform of annual NO3-N leaching for winter and spring cereals, respectively. Nitrate concentration and leaching were shown to be site specific and driven by climatic factors and crop management. There were significant effects on annual N concentration and NO3-N leaching of location, rotation, previous crop and crop cover during autumn and winter. The relative effects of temperature and precipitation differed between seasons and cropping systems. A sensitivity analysis revealed that the predicted N concentration and leaching increased with increases in temperature and precipitation. (C) 2014 Elsevier B.V. All rights reserved. |
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1161-0301 |
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CropM, ftnotmacsur |
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Call Number |
MA @ admin @ |
Serial |
4562 |
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