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Van Oijen, M., & Höglind, M. (2016). Toward a Bayesian procedure for using process-based models in plant breeding, with application to ideotype design. Euphytica, 207(3), 627–643.
Abstract: Process-based grassland models (PBMs) simulate growth and development of vegetation over time. The models tend to have a large number of parameters that represent properties of the plants. To simulate different cultivars of the same species, different parameter values are required. Parameter differences may be interpreted as genetic variation for plant traits. Despite this natural connection between PBMs and plant genetics, there are only few examples of successful use of PBMs in plant breeding. Here we present a new procedure by which PBMs can help design ideotypes, i.e. virtual cultivars that optimally combine properties of existing cultivars. Ideotypes constitute selection targets for breeding. The procedure consists of four steps: (1) Bayesian calibration of model parameters using data from cultivar trials, (2) Estimating genetic variation for parameters from the combination of cultivar-specific calibrated parameter distributions, (3) Identifying parameter combinations that meet breeding objectives, (4) Translating model results to practice, i.e. interpreting parameters in terms of practical selection criteria. We show an application of the procedure to timothy (Phleum pratense L.) as grown in different regions of Norway.
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Özkan, Ş., Hill, J., & Cullen, B. (2014). Effect of climate variability on pasture-based dairy feeding systems in south-east Australia. Animal Production Science, 55(9), 1106–1116.
Abstract: The Australian dairy industry relies primarily on pasture for its feed supply. However, the variability in climate affects plant growth, leading to uncertainty in dryland pasture supply. This paper models the impact of climate variability on pasture production and examines the potential of two pasture-based dairy feeding systems: (1) to experience winter deficits; (2) to carry forward the conserved pasture surpluses as silage for future use; and (3) to conserve pasture surpluses as hay. The two dairy feeding systems examined were a traditional perennial ryegrass-based feeding system (ryegrass max. – RM) and a system that incorporated double cropping into the perennial ryegrass pasture base (complementary forage – CF). The conditional probability of the RM and CF systems to generate pasture deficits in winter were 94% and 96%, respectively. Both systems could carry forward the surplus silage into the following lactation almost once in every 4-5 years with the RM system performing slightly better than the CF system. The proportions of the grain-based concentrates fed in the two systems were 25% and 27% for the RM and CF systems, respectively. This study suggests that double-cropping systems have the potential to provide high-quality feed to support the feed gaps when pasture is not available due to increased variability in climatic conditions.
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Lorite, I. J., Gabaldon-Leal, C., Ruiz-Ramos, M., Belaj, A., de la Rosa, R., Leon, L., et al. (2018). Evaluation of olive response and adaptation strategies to climate change under semi-arid conditions. Agric. Water Manage., 204, 247–261.
Abstract: AdaptaOlive is a simplified physically-based model that has been developed to assess the behavior of olive under future climate conditions in Andalusia, southern Spain. The integration of different approaches based on experimental data from previous studies, combined with weather data from 11 climate models, is aimed at overcoming the high degree of uncertainty in the simulation of the response of agricultural systems under predicted climate conditions. The AdaptaOlive model was applied in a representative olive orchard in the Baeza area, one of the main producer zone in Spain, with the cultivar ‘Picual’. Simulations for the end of the 21st century showed olive oil yield increases of 7.1 and 28.9% under rainfed and full irrigated conditions, respectively, while irrigation requirements decreased between 0.5 and 6.2% for full irrigation and regulated deficit irrigation, respectively. These effects were caused by the positive impact of the increase in atmospheric CO2 that counterbalanced the negative impacts of the reduction in rainfall. The high degree of uncertainty associated with climate projections translated into a high range of yield and irrigation requirement projections, confirming the need for an ensemble of climate models in climate change impact assessment. The AdaptaOlive model also was applied for evaluating adaptation strategies related to cultivars, irrigation strategies and locations. The best performance was registered for cultivars with early flowering dates and regulated deficit irrigation. Thus, in the Baeza area full irrigation requirements were reduced by 12% and the yield in rainfed conditions increased by 7% compared with late flowering cultivars. Similarly, regulated deficit irrigation requirements and yield were reduced by 46% and 18%, respectively, compared with full irrigation. The results confirm the promise offered by these strategies as adaptation measures for managing an olive crop under semi-arid conditions in a changing climate.
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Lizaso, J. I., Ruiz-Rarnos, M., Rodriguez, L., Gabaldon-Leal, C., Oliveira, J. A., Lorite, I. J., et al. (2018). Impact of high temperatures in maize: Phenology and yield components. Field Crops Research, 216, 129–140.
Abstract: Heat stress is a main threat to current and future global maize production. Adaptation of maize to future warmer conditions requires improving our understanding of crop responses to elevated temperatures. For this purpose, the same short-season (FAO 300) maize hybrid PR37N01 was grown over three years of field experiments on three contrasting Spanish locations in terms of temperature regime. The information complemented three years of greenhouse experiments with the same hybrid, applying heat treatments at various critical moments of the crop cycle. Crop phenology, growth, grain yield, and yield components were monitored. An optimized beta function improved the calculation of thermal time compared to the linear-cutoff estimator with base and optimum temperatures of 8 and 34 degrees C, respectively. Our results showed that warmer temperatures accelerate development rate resulting in shorter vegetative and reproductive phases (ca. 30 days for the whole cycle). Heat stress did not cause silking delay in relation to anthesis (extended anthesis-silking interval), at least in the range of temperatures (maximum temperature up to 42.9 degrees C in the field and up to 52.5 degrees C in the greenhouse) considered in this study. Our results indicated that maize grain yield is reduced under heat stress mainly via pollen viability that in turn determines kernel number, although a smaller but significant effect of the female component has been also detected.
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Heinemann, A. B., Barrios-Perez, C., Ramirez-Villegas, J., Arango-Londoño, D., Bonilla-Findji, O., Medeiros, J. C., et al. (2015). Variation and impact of drought-stress patterns across upland rice target population of environments in Brazil. J. Experim. Bot., 66(12), 3625–3638.
Abstract: The upland rice (UR) cropped area in Brazil has decreased in the last decade. Importantly, a portion of this decrease can be attributed to the current UR breeding programme strategy, according to which direct grain yield selection is targeted primarily to the most favourable areas. New strategies for more-efficient crop breeding under non-optimal conditions are needed for Brazil’s UR regions. Such strategies should include a classification of spatio-temporal yield variations in environmental groups, as well as a determination of prevalent drought types and their characteristics (duration, intensity, phenological timing, and physiological effects) within those environmental groups. This study used a process-based crop model to support the Brazilian UR breeding programme in their efforts to adopt a new strategy that accounts for the varying range of environments where UR is currently cultivated. Crop simulations based on a commonly grown cultivar (BRS Primavera) and statistical analyses of simulated yield suggested that the target population of environments can be divided into three groups of environments: a highly favorable environment (HFE, 19% of area), a favorable environment (FE, 44%), and least favourable environment (LFE, 37%). Stress-free conditions dominated the HFE group (69% likelihood) and reproductive stress dominated the LFE group (68% likelihood), whereas reproductive and terminal drought stress were found to be almost equally likely to occur in the FE group. For the best and worst environments, we propose specific adaptation focused on the representative stress, while for the FE, wide adaptation to drought is suggested. ‘Weighted selection’ is also a possible strategy for the FE and LFE environment groups.
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