| Records |
Author  |
Meyer, P. |
| Title |
Epigenetic variation and environmental change |
Type |
Journal Article |
| Year |
2015 |
Publication |
Journal of Experimental Botany |
Abbreviated Journal |
J. Experim. Bot. |
| Volume |
66 |
Issue |
12 |
Pages |
3541-3548 |
| Keywords |
DNA Methylation/genetics; DNA Transposable Elements/genetics; *Environment; *Epigenesis, Genetic; Plants/genetics; Stress, Physiological/genetics; Adaptation; DNA methylation; epigenetics; stress response |
| Abstract |
Environmental conditions can change the activity of plant genes via epigenetic effects that alter the competence of genetic information to be expressed. This may provide a powerful strategy for plants to adapt to environmental change. However, as epigenetic changes do not modify DNA sequences and are therefore reversible, only those epi-mutations that are transmitted through the germline can be expected to contribute to a long-term adaptive response. The major challenge for the investigation of epigenetic adaptation theories is therefore to identify genomic loci that undergo epigenetic changes in response to environmental conditions, which alter their expression in a heritable way and which improve the plant’s ability to adapt to the inducing conditions. This review focuses on the role of DNA methylation as a prominent epigenetic mark that controls chromatin conformation, and on its potential in mediating expression changes in response to environmental signals. |
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| ISSN |
1460-2431 (Electronic) 0022-0957 (Linking) |
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Review |
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CropM |
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no |
| Call Number |
MA @ admin @ |
Serial |
4569 |
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| Author |
Martre, P.; Wallach, D.; Asseng, S.; Ewert, F.; Jones, J.W.; Rötter, R.P.; Boote, K.J.; Ruane, A.C.; Thorburn, P.J.; Cammarano, D.; Hatfield, J.L.; Rosenzweig, C.; Aggarwal, P.K.; Angulo, C.; Basso, B.; Bertuzzi, P.; Biernath, C.; Brisson, N.; Challinor, A.J.; Doltra, J.; Gayler, S.; Goldberg, R.; Grant, R.F.; Heng, L.; Hooker, J.; Hunt, L.A.; Ingwersen, J.; Izaurralde, R.C.; Kersebaum, K.C.; Müller, C.; Kumar, S.N.; Nendel, C.; O’Leary, G.; Olesen, J.E.; Osborne, T.M.; Palosuo, T.; Priesack, E.; Ripoche, D.; Semenov, M.A.; Shcherbak, I.; Steduto, P.; Stöckle, C.O.; Stratonovitch, P.; Streck, T.; Supit, I.; Tao, F.; Travasso, M.; Waha, K.; White, J.W.; Wolf, J. |
| Title |
Multimodel ensembles of wheat growth: many models are better than one |
Type |
Journal Article |
| Year |
2015 |
Publication |
Global Change Biology |
Abbreviated Journal |
Glob. Chang. Biol. |
| Volume |
21 |
Issue |
2 |
Pages |
911-925 |
| Keywords |
Climate; Climate Change; Environment; *Models, Biological; Seasons; Triticum/*growth & development; ecophysiological model; ensemble modeling; model intercomparison; process-based model; uncertainty; wheat (Triticum aestivum L.) |
| Abstract |
Crop models of crop growth are increasingly used to quantify the impact of global changes due to climate or crop management. Therefore, accuracy of simulation results is a major concern. Studies with ensembles of crop models can give valuable information about model accuracy and uncertainty, but such studies are difficult to organize and have only recently begun. We report on the largest ensemble study to date, of 27 wheat models tested in four contrasting locations for their accuracy in simulating multiple crop growth and yield variables. The relative error averaged over models was 24-38% for the different end-of-season variables including grain yield (GY) and grain protein concentration (GPC). There was little relation between error of a model for GY or GPC and error for in-season variables. Thus, most models did not arrive at accurate simulations of GY and GPC by accurately simulating preceding growth dynamics. Ensemble simulations, taking either the mean (e-mean) or median (e-median) of simulated values, gave better estimates than any individual model when all variables were considered. Compared to individual models, e-median ranked first in simulating measured GY and third in GPC. The error of e-mean and e-median declined with an increasing number of ensemble members, with little decrease beyond 10 models. We conclude that multimodel ensembles can be used to create new estimators with improved accuracy and consistency in simulating growth dynamics. We argue that these results are applicable to other crop species, and hypothesize that they apply more generally to ecological system models. |
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1354-1013 |
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CropM, ftnotmacsur |
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no |
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MA @ admin @ |
Serial |
4665 |
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| Author |
Mansouri, M.; Dumont, B.; Destain, M.-F. |
| Title |
Modeling and prediction of nonlinear environmental system using Bayesian methods |
Type |
Journal Article |
| Year |
2013 |
Publication |
Computers and Electronics in Agriculture |
Abbreviated Journal |
Computers and Electronics in Agriculture |
| Volume |
92 |
Issue |
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Pages |
16-31 |
| Keywords |
state and parameter estimation; variational filter; particle filter; extended kalman filter; nonlinear environmental system; leaf area index and soil moisture model; extended kalman filter; state-space models; parameter-estimation; particle filters; navigation; tutorial; tracking |
| Abstract |
An environmental dynamic system is usually modeled as a nonlinear system described by a set of nonlinear ODEs. A central challenge in computational modeling of environmental systems is the determination of the model parameters. In these cases, estimating these variables or parameters from other easily obtained measurements can be extremely useful. This work addresses the problem of monitoring and modeling a leaf area index and soil moisture model (LSM) using state estimation. The performances of various conventional and state-of-the-art state estimation techniques are compared when they are utilized to achieve this objective. These techniques include the extended Kalman filter (EKF), particle filter (PF), and the more recently developed technique variational filter (VF). Specifically, two comparative studies are performed. In the first comparative study, the state variables (the leaf-area index LAI, the volumetric water content of the soil layer 1, HUR1 and the volumetric water content of the soil layer 2, HUR2) are estimated from noisy measurements of these variables, and the various estimation techniques are compared by computing the estimation root mean square error (RMSE) with respect to the noise-free data. In the second comparative study, the state variables as well as the model parameters are simultaneously estimated. In this case, in addition to comparing the performances of the various state estimation techniques, the effect of number of estimated model parameters on the accuracy and convergence of these techniques are also assessed. The results of both comparative studies show that the PF provides a higher accuracy than the EKF, which is due to the limited ability of the EKF to handle highly nonlinear processes. The results also show that the VF provides a significant improvement over the PF because, unlike the PF which depends on the choice of sampling distribution used to estimate the posterior distribution, the VF yields an optimum choice of the sampling distribution, which also accounts for the observed data. The results of the second comparative study show that, for all techniques, estimating more model parameters affects the estimation accuracy as well as the convergence of the estimated states and parameters. However, the VF can still provide both convergence as well as accuracy related advantages over other estimation methods. (C) 2013 Elsevier B.V. All rights reserved. |
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0168-1699 |
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CropM |
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no |
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MA @ admin @ |
Serial |
4495 |
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| Author |
Lardy, R.; Bellocchi, G.; Martin, R. |
| Title |
Vuln-Indices: Software to assess vulnerability to climate change |
Type |
Journal Article |
| Year |
2015 |
Publication |
Computers and Electronics in Agriculture |
Abbreviated Journal |
Computers and Electronics in Agriculture |
| Volume |
114 |
Issue |
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Pages |
53-57 |
| Keywords |
climate change; Java; vulnerability indices; pasture simulation-model; integrated assessment; environmental-change; change impacts; system |
| Abstract |
Vuln-Indices Java-based software was developed on concepts of vulnerability to climate change of agro-ecological systems. It implements the calculation of vulnerability indices on series of state variables for assessments at both site and region levels. The tool is useful because synthetic indices help capturing complex processes and prove effective to identify the factors responsible for vulnerability and their relative importance. It is suggested that the tool may be plausible for use with stakeholders to disseminate information of climate change impacts. (C) 2015 Elsevier B.V. All rights reserved. |
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0168-1699 |
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LiveM, ft_macsur |
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no |
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MA @ admin @ |
Serial |
4648 |
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| Author |
Kros, J.; Bakker, M.M.; Reidsma, P.; Kanellopoulos, A.; Jamal Alam, S.; de Vries, W. |
| Title |
Impacts of agricultural changes in response to climate and socioeconomic change on nitrogen deposition in nature reserves |
Type |
Journal Article |
| Year |
2015 |
Publication |
Landscape Ecology |
Abbreviated Journal |
Landscape Ecol. |
| Volume |
30 |
Issue |
5 |
Pages |
871-885 |
| Keywords |
Agricultural adaptation; Climate change; Land use change; Environmental; impact; Farming system; Nitrogen losses; netherlands; diversity; scenario |
| Abstract |
This paper describes the environmental consequences of agricultural adaptation on eutrophication of the nearby ecological network for a study area in the Netherlands. More specifically, we explored (i) likely responses of farmers to changes in climate, technology, policy, and markets; (ii) subsequent changes in nitrogen (N) emissions in responses to farmer adaptations; and (iii) to what extent the emitted N was deposited in nearby nature reserves, in view of the potential impacts on plant species diversity and desired nature targets. For this purpose, a spatially-explicit study at landscape level was performed by integrating the environmental model INITIATOR, the farm model FSSIM, and the land-use model RULEX. We evaluated two alternative scenarios of change in climate, technology, policy, and markets for 2050: one in line with a ‘global economy’ (GE) storyline and the other in line with a ‘regional communities’ (RC) storyline. Results show that the GE storyline resulted in a relatively strong increase in agricultural production compared to the RC storyline. Despite the projected conversions of agricultural land to nature (as part of the implementation of the National Ecological Network), we project an increase in N losses and N deposition due to N emissions in the study area of about 20 %. Even in the RC storyline, with a relatively modest increase in agricultural production and a larger expansion of the nature reserve, the N losses and deposition remain at the current level, whereas a reduction is required. We conclude that more ambitious green policies are needed in view of nature protection. |
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0921-2973 1572-9761 |
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CropM |
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no |
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MA @ admin @ |
Serial |
4565 |
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