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Stefańczyk, E., Sobkowiak, S., Brylińska, M., & Śliwka, J. (2016). Diversity of Fusarium spp. associated with dry rot of potato tubers in Poland. Eur. J. Plant Pathol., .
Abstract: Fusarium spp. belong to the division Ascomycota and cause important plant diseases; these fungi may contaminate food products with mycotoxins, endangering human and animal health. Several Fusarium spp. have been associated with potato dry rot. The most frequent and devastating of these species are F. sambucinum, F. solani and F. oxysporum, depending on the geographic location and the season. Samples of potato tubers with dry rot symptoms were collected, and their putative fungal isolates were identified as Fusarium species using partial nucleotide sequences of the internal transcribed spacer, translation elongation factor 1-α and β-tubulin genes. Among 149 isolates, 12 species were identified. F. oxysporum was the most frequent (45 % of the isolates), followed by F. avenaceum (12.1 %), F. solani (10.7 %) and F. sambucinum (7.4 %). Phylogenetic analyses confirmed the species identifications and revealed a high diversity of F. solani and a low diversity of F. oxysporum. Potential producers of zearalenone and trichothecenes were identified within the obtained isolates using PCR markers. Isolates that were pathogenic to potatoes in laboratory tests were found in four species: F. sambucinum, F. avenaceum, F. culmorum, and F. graminearum. The effects of increased temperature and mixed inoculum on the pathogenicities of chosen species were evaluated. This study adds 434 potato-derived Fusarium sequences to the NCBI GenBank database and demonstrates that the list of Fusarium species and mycotoxins present in potato tubers may be richer than previously believed, regardless of whether these species cause dry rot or live as saprophytes.
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Zhao, G., Hoffmann, H., Yeluripati, J., Xenia, S., Nendel, C., Coucheney, E., et al. (2016). Evaluating the precision of eight spatial sampling schemes in estimating regional means of simulated yield for two crops. Env. Model. Softw., 80, 100–112.
Abstract: We compared the precision of simple random sampling (SimRS) and seven types of stratified random sampling (StrRS) schemes in estimating regional mean of water-limited yields for two crops (winter wheat and silage maize) that were simulated by fourteen crop models. We found that the precision gains of StrRS varied considerably across stratification methods and crop models. Precision gains for compact geographical stratification were positive, stable and consistent across crop models. Stratification with soil water holding capacity had very high precision gains for twelve models, but resulted in negative gains for two models. Increasing the sample size monotonously decreased the sampling errors for all the sampling schemes. We conclude that compact geographical stratification can modestly but consistently improve the precision in estimating regional mean yields. Using the most influential environmental variable for stratification can notably improve the sampling precision, especially when the sensitivity behavior of a crop model is known.
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Hoffmann, H., Zhao, G., Asseng, S., Bindi, M., Biernath, C., Constantin, J., et al. (2016). Impact of spatial soil and climate input data aggregation on regional yield simulations. PLoS One, 11(4), e0151782.
Abstract: We show the error in water-limited yields simulated by crop models which is associated with spatially aggregated soil and climate input data. Crop simulations at large scales (regional, national, continental) frequently use input data of low resolution. Therefore, climate and soil data are often generated via averaging and sampling by area majority. This may bias simulated yields at large scales, varying largely across models. Thus, we evaluated the error associated with spatially aggregated soil and climate data for 14 crop models. Yields of winter wheat and silage maize were simulated under water-limited production conditions. We calculated this error from crop yields simulated at spatial resolutions from 1 to 100 km for the state of North Rhine-Westphalia, Germany. Most models showed yields biased by <15% when aggregating only soil data. The relative mean absolute error (rMAE) of most models using aggregated soil data was in the range or larger than the inter-annual or inter-model variability in yields. This error increased further when both climate and soil data were aggregated. Distinct error patterns indicate that the rMAE may be estimated from few soil variables. Illustrating the range of these aggregation effects across models, this study is a first step towards an ex-ante assessment of aggregation errors in large-scale simulations.
Keywords: systems simulation; nitrogen dynamics; winter-wheat; crop models; data resolution; scale; water; variability; calibration; weather
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Hoffmann, H., Zhao, G., van Bussel, L. G. J., Enders, A., Specka, X., Sosa, C., et al. (2015). Variability of effects of spatial climate data aggregation on regional yield simulation by crop models. Clim. Res., 65, 53–69.
Abstract: Field-scale crop models are often applied at spatial resolutions coarser than that of the arable field. However, little is known about the response of the models to spatially aggregated climate input data and why these responses can differ across models. Depending on the model, regional yield estimates from large-scale simulations may be biased, compared to simulations with high-resolution input data. We evaluated this so-called aggregation effect for 13 crop models for the region of North Rhine-Westphalia in Germany. The models were supplied with climate data of 1 km resolution and spatial aggregates of up to 100 km resolution raster. The models were used with 2 crops (winter wheat and silage maize) and 3 production situations (potential, water-limited and nitrogen-water-limited growth) to improve the understanding of errors in model simulations related to data aggregation and possible interactions with the model structure. The most important climate variables identified in determining the model-specific input data aggregation on simulated yields were mainly related to changes in radiation (wheat) and temperature (maize). Additionally, aggregation effects were systematic, regardless of the extent of the effect. Climate input data aggregation changed the mean simulated regional yield by up to 0.2 t ha(-1), whereas simulated yields from single years and models differed considerably, depending on the data aggregation. This implies that large-scale crop yield simulations are robust against climate data aggregation. However, large-scale simulations can be systematically biased when being evaluated at higher temporal or spatial resolution depending on the model and its parameterization.
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Kim, Y., Seo, Y., Kraus, D., Klatt, S., Haas, E., Tenhunen, J., et al. (2015). Estimation and mitigation of N₂O emission and nitrate leaching from intensive crop cultivation in the Haean catchment, South Korea. Science of the Total Environment, 529, 40–53.
Abstract: Considering intensive agricultural management practices and environmental conditions, the LandscapeDNDC model was applied for simulation of yields, N2O emission and nitrate leaching from major upland crops and temperate deciduous forest of the Haean catchment, South Korea. Fertilization rates were high (up to 314 kg N ha(-1) year(-1)) and resulted in simulated direct N2O emissions from potato, radish, soybean and cabbage fields of 1.9 and 2.1 kg N ha(-1) year(-1) in 2009 and 2010, respectively. Nitrate leaching was identified as the dominant pathway of N losses in the Haean catchment with mean annual rates of 112.2 and 125.4 kg N ha(-1) year(-1), causing threats to water quality and leading to substantial indirect N2O emissions of 0.84 and 0.94 kg N ha(-1) year(-1) in 2009 and 2010 as estimates by applying the IPCC EF5. Simulated N2O emissions from temperate deciduous forest were low (approx. 0.50 kg N ha(-1) year(-1)) and predicted nitrate leaching rates were even negligible (≤0.01 kg N ha(-1) year(-1)). On catchment scale more than 50% of the total N2O emissions and up to 75% of nitrate leaching originated from fertilized upland fields, only covering 24% of the catchment area. Taking into account area coverage of simulated upland crops and other land uses these numbers agree well with nitrate loads calculated from discharge and concentration measurements at the catchment outlet. The change of current agricultural management practices showed a high potential of reducing N2O emission and nitrate leaching while maintaining current crop yields. Reducing (39%) and splitting N fertilizer application into 3 times was most effective and lead to about 54% and 77% reducing of N2O emission and nitrate leaching from the Haean catchment, the latter potentially contributing to improved water quality in the Soyang River Dam, which is the major source of drinking water for metropolitan residents.
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