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Dumont, B., Leemans, V., Mansouri, M., Bodson, B., Destain, J. - P., & Destain, M. - F. (2014). Parameter identification of the STICS crop model, using an accelerated formal MCMC approach. Env. Model. Softw., 52, 121–135.
Abstract: This study presents a Bayesian approach for the parameters’ identification of the STICS crop model based on the recently developed Differential Evolution Adaptive Metropolis (DREAM) algorithm. The posterior distributions of nine specific crop parameters of the STICS model were sampled with the aim to improve the growth simulations of a winter wheat (Triticum aestivum L) culture. The results obtained with the DREAM algorithm were initially compared to those obtained with a Nelder-Mead Simplex algorithm embedded within the OptimiSTICS package. Then, three types of likelihood functions implemented within the DREAM algorithm were compared, namely the standard least square, the weighted least square, and a transformed likelihood function that makes explicit use of the coefficient of variation (CV). The results showed that the proposed CV likelihood function allowed taking into account both noise on measurements and heteroscedasticity which are regularly encountered in crop modelling. (C) 2013 Elsevier Ltd. All rights reserved.
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Wolf, J., Ouattara, K., & Supit, I. (2015). Sowing rules for estimating rainfed yield potential of sorghum and maize in Burkina Faso. Agricultural and Forest Meteorology, 214-215, 208–218.
Abstract: To reduce the dependence on local expert knowledge, which is important for large-scale crop modelling studies, we analyzed sowing dates and rules for maize (Zea mays L.) and sorghum (Sorghum bicolor (L)) at three locations in Burkina Faso with strongly decreasing rainfall amounts from south to north. We tested in total 22 methods to derive optimal sowing dates that result in highest water-limited yields and lowest yield variation in a reproducible and objective way. The WOFOST crop growth simulation model was used. We found that sowing dates that are based on local expert knowledge, may work quite well for Burkina Faso and for West Africa in general. However, when no a priori information is available, maize should be sown between Julian days 160 and 200, with application of the following criteria: (a) cumulative rainfall in the sowing window is >= 3 cm or available soil moisture content is >2 cm in the moderately dry central part of Burkina Faso, (b) cumulative rainfall in this period is >= 2 cm or available soil moisture content is >1 cm in the more humid regions in the southern part of Burkina Faso. Sorghum should also be sown between Julian days 160 and 200 with application of the following criteria: (a) in the dry northern part of Burkina Faso the long duration sorghum variety should be sown when cumulative rainfall is >2 cm in the sowing window, and the short duration sorghum variety should be sown later when cumulative rainfall is >= 3 cm, (b) in central Burkina Faso sowing should start when cumulative rainfall in this period is >= 2 cm or when available soil moisture content is >1 cm. Sowing date rules are shown to be generally crop and location specific and are not generic for West Africa. However, the required precision of the sowing rules appears to rapidly decrease with increasing duration and intensity of the rainy season. Sowing delay as a result of, for example, labour constraints, has a disastrous effect on rainfed maize and sorghum yields, particularly in the northern part of West Africa with low rainfall. Optimization of sowing dates can also be done by simulating crop yields in a time window of two months around a predefined sowing date. Using these optimized dates appears to result in a good estimate of the maximal mean rainfed yield level. (C) 2015 Elsevier B.V. All rights reserved.
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Sándor, R., Barcza, Z., Hidy, D., Lellei-Kovács, E., Ma, S., & Bellocchi, G. (2016). Modelling of grassland fluxes in Europe: evaluation of two biogeochemical models. Agric. Ecosyst. Environ., 215, 1–19.
Abstract: Two independently developed simulation models – the grassland-specific PaSim and the biome-generic Biome-BGC MuSo (BBGC MuSo) – linking climate, soil, vegetation and management to ecosystem biogeochemical cycles were compared in a simulation of carbon (C) and water fluxes. The results were assessed against eddy-covariance flux data from five observational grassland sites representing a range of conditions in Europe: Grillenburg in Germany, Laqueuille in France with both extensive and intensive management, Monte Bondone in Italy and Oensingen in Switzerland. Model comparison (after calibration) gave substantial agreement, the performances being marginal to acceptable for weekly-aggregated gross primary production and ecosystem respiration (R-2 similar to 0.66 – 0.91), weekly evapotranspiration (R-2 similar to 0.78 – 0.94), soil water content in the topsoil (R-2 similar to 0.1 -0.7) and soil temperature (R-2 similar to 0.88 – 0.96). The bias was limited to the range -13 to 9 g C m(-2) week(-1) for C fluxes (-11 to 8 g C m(-2) week(-1) in case of BBGC MuSo, and -13 to 9 g C m(-2) week(-1) in case of PaSim) and -4 to 6 mm week for water fluxes (with BBGC MuSo providing somewhat higher estimates than PaSim), but some higher relative root mean square errors indicate low accuracy for prediction, especially for net ecosystem exchange The sensitivity of simulated outputs to changes in atmospheric carbon dioxide concentration ([CO2]), temperature and precipitation indicate, with certain agreement between the two models, that C outcomes are dominated by [CO2] and temperature gradients, and are less due to precipitation. ET rates decrease with increasing [CO2] in PaSim (consistent with experimental knowledge), while lack of appropriate stomatal response could be a limit in BBGC MuSo responsiveness. Results of the study indicate that some of the errors might be related to the improper representation of soil water content and soil temperature. Improvement is needed in the model representations of soil processes (especially soil water balance) that strongly influence the biogeochemical cycles of managed and unmanaged grasslands. (C) 2015 Elsevier B.V. All rights reserved.
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Orsini, F., Alnayef, M., Bona, S., Maggio, A., & Gianquinto, G. (2012). Low stomatal density and reduced transpiration facilitate strawberry adaptation to salinity. Environmental and Experimental Botany, 81, 1–10.
Abstract: Water and soil salinization are major constraints to agricultural productions because plant adaptation to hyperosmotic environments is generally associated to reduced growth and ultimately yield loss. Understanding the physiological/molecular mechanisms that link adaptation and growth is one of the greatest challenges in plant stress research since it would allow us to better define strategies to improve crop salt tolerance. In this study we attempted to establish a functional link between morphological and physiological traits in strawberry in order to identify margins to “uncouple” plant growth and stress adaptation. Two strawberry cultivars, Elsanta and Elsinore, were grown under 0, 10.20 and 40 mM NaCl. Upon salinization Elsanta plants maintained a larger and more functional leaf area compared to Elsinore plants, which were irreversibly damaged at 40 mM NaCl. The tolerance of Elsanta was correlated with a constitutive reduced transpirational flux due to low stomata! density (173 vs. 234 stomata mm(-2) in Elsanta and Elsinore, respectively), which turned out to be critical to pre-adapt plants to the oncoming stress. The reduced transpiration rate of Elsanta (14.7 g H2O plant(-1) h(-1)) respect to Elsinore (17.7 g H2O plant(-1) h(-1)) most likely delayed the accumulation of toxic ions into the leaves, preserved tissues dehydration and consented to adjust more effectively to the hyperosmotic environment. Although we cannot rule out the contribution of other physiological and molecular mechanisms to the relatively higher tolerance of Elsanta, here we demonstrate that low stomatal density may be beneficial for cultivars prescribed to be used in marginal environments in terms of salinity and/or drought. (C) 2012 Elsevier B.V. All rights reserved.
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Ruane, A. C., Hudson, N. I., Asseng, S., Camarrano, D., Ewert, F., Martre, P., et al. (2016). Multi-wheat-model ensemble responses to interannual climate variability. Env. Model. Softw., 81, 86–101.
Abstract: We compare 27 wheat models’ yield responses to interannual climate variability, analyzed at locations in Argentina, Australia, India, and The Netherlands as part of the Agricultural Model Intercomparison and Improvement Project (AgMIP) Wheat Pilot. Each model simulated 1981-2010 grain yield, and we evaluate results against the interannual variability of growing season temperature, precipitation, and solar radiation. The amount of information used for calibration has only a minor effect on most models’ climate response, and even small multi-model ensembles prove beneficial. Wheat model clusters reveal common characteristics of yield response to climate; however models rarely share the same cluster at all four sites indicating substantial independence. Only a weak relationship (R-2 <= 0.24) was found between the models’ sensitivities to interannual temperature variability and their response to long-term warming, suggesting that additional processes differentiate climate change impacts from observed climate variability analogs and motivating continuing analysis and model development efforts. Published by Elsevier Ltd.
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