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Van Oijen, M., & Höglind, M. (2016). Toward a Bayesian procedure for using process-based models in plant breeding, with application to ideotype design. Euphytica, 207(3), 627–643.
Abstract: Process-based grassland models (PBMs) simulate growth and development of vegetation over time. The models tend to have a large number of parameters that represent properties of the plants. To simulate different cultivars of the same species, different parameter values are required. Parameter differences may be interpreted as genetic variation for plant traits. Despite this natural connection between PBMs and plant genetics, there are only few examples of successful use of PBMs in plant breeding. Here we present a new procedure by which PBMs can help design ideotypes, i.e. virtual cultivars that optimally combine properties of existing cultivars. Ideotypes constitute selection targets for breeding. The procedure consists of four steps: (1) Bayesian calibration of model parameters using data from cultivar trials, (2) Estimating genetic variation for parameters from the combination of cultivar-specific calibrated parameter distributions, (3) Identifying parameter combinations that meet breeding objectives, (4) Translating model results to practice, i.e. interpreting parameters in terms of practical selection criteria. We show an application of the procedure to timothy (Phleum pratense L.) as grown in different regions of Norway.
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Cammarano, D., Rötter, R. P., Asseng, S., Ewert, F., Wallach, D., Martre, P., et al. (2016). Uncertainty of wheat water use: Simulated patterns and sensitivity to temperature and CO2. Field Crops Research, 198, 80–92.
Abstract: Projected global warming and population growth will reduce future water availability for agriculture. Thus, it is essential to increase the efficiency in using water to ensure crop productivity. Quantifying crop water use (WU; i.e. actual evapotranspiration) is a critical step towards this goal. Here, sixteen wheat simulation models were used to quantify sources of model uncertainty and to estimate the relative changes and variability between models for simulated WU, water use efficiency (WUE, WU per unit of grain dry mass produced), transpiration efficiency (Teff, transpiration per kg of unit of grain yield dry mass produced), grain yield, crop transpiration and soil evaporation at increased temperatures and elevated atmospheric carbon dioxide concentrations ([CO2]). The greatest uncertainty in simulating water use, potential evapotranspiration, crop transpiration and soil evaporation was due to differences in how crop transpiration was modelled and accounted for 50% of the total variability among models. The simulation results for the sensitivity to temperature indicated that crop WU will decline with increasing temperature due to reduced growing seasons. The uncertainties in simulated crop WU, and in particularly due to uncertainties in simulating crop transpiration, were greater under conditions of increased temperatures and with high temperatures in combination with elevated atmospheric [CO2] concentrations. Hence the simulation of crop WU, and in particularly crop transpiration under higher temperature, needs to be improved and evaluated with field measurements before models can be used to simulate climate change impacts on future crop water demand.
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Graß, R., Thies, B., Kersebaum, K. - C., & Wachendorf, M. (2015). Simulating dry matter yield of two cropping systems with the simulation model HERMES to evaluate impact of future climate change. European Journal of Agronomy, 70, 1–10.
Abstract: Regionalized model calculations showed increased rainfall and temperatures in winter and less precipitation and higher temperatures in summer due to climate change effects in the future for numerous countries in the northern hemisphere. Furthermore, model simulations predicted enhanced weather variability with an increased risk of yield losses and reduced yield stability. Recently, double cropping systems (DCS) were suggested as an environmental friendly and productive adaptation strategy with increased yield stability. This paper reviews the potential benefit of four DCS (rye (Secale cereale L.) as first crop and maize (Zea mays L.), sunflower (Helianthus annuus L.), sorghum (Sorghum sudanense L. x Sorghum bicolor L.) and sudan grass (S. sudanense L.) as second crops) in comparison with four conventional sole cropping systems (SCS) (maize, sunflower, sorghum and sudan grass) with regard to dry matter (DM) yield and soil water under conditions of climate change. We used the agro-ecosystem model HERMES for simulating these variables until the year 2100. The investigated crops sunflower, sorghum and sudan grass were parameterised first for HERMES achieving a satisfying performance. Results showed always higher DM yields per year of DCS compared with SCS. This was mainly caused by yield increases of the first crop winter rye harvested at the stage of milk ripeness. As a winter hardy crop, rye will benefit from increased precipitation and higher temperatures during winter months as well as from extended growth periods with an earlier onset in spring and an increase of growing days. Furthermore, rye is able to use the increased winter humidity for its spring growth in an efficient way. By contrast, model simulations showed that summer crops will be affected by reduced precipitation and higher temperatures during summer month for periods from 2050 onwards with the consequence of reduced yields. This yield reduction was found for all summer crops both in conventional sole crop and in DCS. Preponed harvesting of first crop winter rye as a consequence of earlier onset of growth period in spring under prospective climatic conditions lead to yield decrease, which could not be equalised by preponed sowing of second crops and extension of their growth period. Hence, total annual yield of both crops together decreased. The modification of sowing and harvesting dates as an adaptation strategy requires further research with the use of more holistic simulation models. To summarize, DCS may provide a promising adaptation strategy to effects of climate change with a substantial stabilisation of crop yields.
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Dono, G., Cortignani, R., Doro, L., Giraldo, L., Ledda, L., Pasqui, M., et al. (2013). Adapting to uncertainty associated with short-term climate variability changes in irrigated Mediterranean farming systems. Agricultural Systems, 117, 1–12.
Abstract: Short-term perspectives appear to be relevant in formulating adaptation measures to changed climate variability (CCV) as a part of the European Rural Development Policy (RDP). Indeed, short-run CCV is the variation that farmers would perceive to such an extent that a political demand would be generated for adapting support measures. This study evaluates some relevant agronomic and economic impacts of CCV as modelled in a near future time period at the catchment scale in a rural district in Sardinia (Italy). The effects of CCV are assessed in relation to the availability of irrigation water and the irrigation needs of maize. The Environmental Policy Integrated Climate (EPIC) model was used to simulate the impact of key climatic variables on the irrigation water requirements and yields of maize. A three-stage discrete stochastic programming model was then applied to simulate management and economic responses to those changes. The overall economic impact of a simulated CCV was found to be primarily caused by reduced stability in the future supply of irrigation water. Adaptations to this instability will most likely lead to a higher level of groundwater extraction and a reduction in the demand for labour. Changed climate variability will most likely reduce the income potential of small-scale farming. The most CCV-vulnerable farm typologies were identified, and the implications were discussed in relation to the development of adaptation measures within the context of the Common Agricultural Policy of European Union. (C) 2013 Elsevier Ltd. All rights reserved.
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Coucheney, E., Buis, S., Launay, M., Constantin, J., Mary, B., García de Cortázar-Atauri, I., et al. (2015). Accuracy, robustness and behavior of the STICS soil–crop model for plant, water and nitrogen outputs: Evaluation over a wide range of agro-environmental conditions in France. Env. Model. Softw., 64, 177–190.
Abstract: Soil-crop models are increasingly used as predictive tools to assess yield and environmental impacts of agriculture in a growing diversity of contexts. They are however seldom evaluated at a given time over a wide domain of use. We tested here the performances of the STICS model (v8.2.2) with its standard set of parameters over a dataset covering 15 crops and a wide range of agropedoclimatic conditions in France. Model results showed a good overall accuracy, with little bias. Relative RMSE was larger for soil nitrate (49%) than for plant biomass (35%) and nitrogen (33%) and smallest for soil water (10%). Trends induced by contrasted environmental conditions and management practices were well reproduced. Finally, limited dependency of model errors on crops or environments indicated a satisfactory robustness. Such performances make STICS a valuable tool for studying the effects of changes in agro-ecosystems over the domain explored. (C) 2014 Elsevier Ltd. All rights reserved.
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