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Gabaldón-Leal, C., Webber, H., Otegui, M. E., Slafer, G. A., Ordonez, R. A., Gaiser, T., et al. (2016). Modelling the impact of heat stress on maize yield formation. Field Crops Research, 198, 226–237.
Abstract: The frequency and intensity of extreme high temperature events are expected to increase with climate change. Higher temperatures near anthesis have a large negative effect on maize (Zea mays, L.) grain yield. While crop growth models are commonly used to assess climate change impacts on maize and other crops, it is only recently that they have accounted for such heat stress effects, despite limited field data availability for model evaluation. There is also increasing awareness but limited testing of the importance of canopy temperature as compared to air temperature for heat stress impact simulations. In this study, four independent irrigated field trials with controlled heating imposed using polyethylene shelters were used to develop and evaluate a heat stress response function in the crop modeling framework SIMPLACE, in which the Lintul5 crop model was combined with a canopy temperature model. A dataset from Argentina with the temperate hybrid Nidera AX 842 MG (RM 119) was used to develop a yield reduction function based on accumulated hourly stress thermal time above a critical temperature of 34 degrees C. A second dataset from Spain with a FAO 700 cultivar was used to evaluate the model with daily weather inputs in two sets of simulations. The first was used to calibrate SIMPLACE for conditions with no heat stress, and the second was used to evaluate SIMPLACE under conditions of heat stress using the reduction factor obtained with the Argentine dataset. Both sets of simulations were conducted twice; with the heat stress function alternatively driven with air and simulated canopy temperature. Grain yield simulated under heat stress conditions improved when canopy temperature was used instead of air temperature (RMSE equal to 175 and 309 g m(-2), respectively). For the irrigated and high radiative conditions, raising the critical threshold temperature for heat stress to 39 degrees C improved yield simulation using air temperature (RMSE: 221 gm(-2)) without the need to simulate canopy temperature (RMSE: 175 gm(-2)). However, this approach of adjusting thresholds is only likely to work in environments where climatic variables and the level of soil water deficit are constant, such as irrigated conditions and are not appropriate for rainfed production conditions. (C) 2016 Elsevier B.V. All rights reserved.
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Wallach, D., Mearns, L. O., Ruane, A. C., Rötter, R. P., & Asseng, S. (2016). Lessons from climate modeling on the design and use of ensembles for crop modeling. Clim. Change, 139(3-4), 551–564.
Abstract: Working with ensembles of crop models is a recent but important development in crop modeling which promises to lead to better uncertainty estimates for model projections and predictions, better predictions using the ensemble mean or median, and closer collaboration within the modeling community. There are numerous open questions about the best way to create and analyze such ensembles. Much can be learned from the field of climate modeling, given its much longer experience with ensembles. We draw on that experience to identify questions and make propositions that should help make ensemble modeling with crop models more rigorous and informative. The propositions include defining criteria for acceptance of models in a crop MME, exploring criteria for evaluating the degree of relatedness of models in a MME, studying the effect of number of models in the ensemble, development of a statistical model of model sampling, creation of a repository for MME results, studies of possible differential weighting of models in an ensemble, creation of single model ensembles based on sampling from the uncertainty distribution of parameter values or inputs specifically oriented toward uncertainty estimation, the creation of super ensembles that sample more than one source of uncertainty, the analysis of super ensemble results to obtain information on total uncertainty and the separate contributions of different sources of uncertainty and finally further investigation of the use of the multi-model mean or median as a predictor.
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Tao, F., Roetter, R. P., Palosuo, T., Diaz-Ambrona, C. G. H., Ines Minguez, M., Semenov, M. A., et al. (2017). Designing future barley ideotypes using a crop model ensemble. Europ. J. Agron., 82, 144–162.
Abstract: Climate change and its associated higher frequency and severity of adverse weather events require genotypic adaptation. Process-based ecophysiological modelling offers a powerful means to better target and accelerate development of new crop cultivars. Barley (Hordeum vulgare L) is an important crop throughout the world, and a good model for study of the genetics of stress adaptation because many quantitative trait loci and candidate genes for biotic and abiotic stress tolerance have been identified in it. Here, we developed a new approach to design future crop ideotypes using an ensemble of eight barley simulation models (i.e. APSIM, CropSyst, HERMES, MCWLA, MONICA, SIMPLACE, Sirius Quality, and WOFOST), and applied it to design climate-resilient barley ideotypes for Boreal and Mediterranean climatic zones in Europe. The results showed that specific barley genotypes, represented by sets of cultivar parameters in the crop models, could be promising under future climate change conditions, resulting in increased yields and low inter-annual yield variability. In contrast, other genotypes could result in substantial yield declines. The most favorable climate-zone-specific barley ideotypes were further proposed, having combinations of several key genetic traits in terms of phenology, leaf growth, photosynthesis, drought tolerance, and grain formation. For both Boreal and Mediterranean climatic zones, barley ideotypes under future climatic conditions should have a longer reproductive growing period, lower leaf senescence rate, larger radiation use efficiency or maximum assimilation rate, and higher drought tolerance. Such characteristics can produce substantial positive impacts on yields under contrasting conditions. Moreover, barley ideotypes should have a low photoperiod and high vernalization sensitivity for the Boreal climatic zone; for the Mediterranean, in contrast, it should have a low photoperiod and low vernalization sensitivity. The drought-tolerance trait is more beneficial for the Mediterranean than for the Boreal climatic zone. Our study demonstrates a sound approach to design future barley ideotypes based on an ensemble of well-tested, diverse crop models and on integration of knowledge from multiple disciplines. The robustness of model-aided ideotypes design can be further enhanced by continuously improving crop models and enhancing information exchange between modellers, agro-meteorologists, geneticists, physiologists, and plant breeders. (C) 2016 Elsevier B.V. All rights reserved.
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Lai, R., Arca, P., Lagomarsino, A., Cappai, C., Seddaiu, G., Demurtas, C. E., et al. (2017). Manure fertilization increases soil respiration and creates a negative carbon budget in a Mediterranean maize (Zea mays L.)-based cropping system. Catena, 151, 202–212.
Abstract: Agronomic research is important to identify suitable options for improving soil carbon (C) sequestration and reducing soil CO2 emissions. Therefore, the objectives of this study were i) to analyse the on-farm effects of different nitrogen fertilization sources on soil respiration, ii) to explore the effect of fertilization on soil respiration sensitivity to soil temperature (T) and iii) to assess the effect of the different fertilization regimes on the soil C balance. We hypothesized that i) the soil CO2 emission dynamics in Mediterranean irrigated cropping systems were mainly affected by fertilization management and T and ii) fertilization affected the soil C budget via different C inputs and CO2 efflux. Four fertilization systems (farmyard manure, cattle slurry, cattle slurry + mineral, and mineral) were compared in a double-crop rotation based on silage maize (Zea mays L) and a mixture of Italian ryegrass (Lolium multiflorum Lam.) and oats (Avena sativa L). The research was performed in the dairy district of Arborea, in the coastal zone of Sardinia (Italy), from May 2011 to May 2012. The soil was a Psammentic Palexeralfs with a sandy texture (940 g sand kg(-1)). The soil total respiration (SR), heterotrophic respiration (Rh), T and soil water content (SWC) were simultaneously measured in situ. The soil C balance was computed considering the Rh C losses and the soil C inputs from fertilizer and crop residues. The results showed that the maximum soil CO2 emission rates soon after the application of organic fertilizer reached values up to 121,1111 1 111(-2) s(-1). On average, the manure fertilizer showed significantly higher CO2 emissions, which resulted in a negative annual C balance (-2.9 t ha(-1)). T also affected the soil respiration temporal dynamics during the summer, consistently with results obtained in other temperate climatic regions that are characterized by wet summers and contrary to results from rainfed Mediterranean systems where the summer SR and Rh are constrained by the low SWC. The sensitivity of soil respiration to temperature significantly increased with C input from fertilizer. In conclusion, this research supported the hypotheses tested. Furthermore, the results indicated that i) soil CO2 efflux was significantly affected by fertilization management and T, and ii) fertilization with manure increased the soil respiration and resulted in a significantly negative soil C budget. This latter finding could be primarily explained by a reduction in productivity and, consequently, in crop residue with organic fertilization alone as compared to mineral, by the favourable SWC and T for mineralization, and by the sandy soil texture, which hindered the formation of macroaggregates and hence soil C stabilization, making fertilizer organic inputs highly susceptible to mineralization. (C) 2016 Elsevier B.V. All rights reserved.
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Schauberger, B., Rolinski, S., & Müller, C. (2016). A network-based approach for semi-quantitative knowledge mining and its application to yield variability. Environ. Res. Lett., 11(12), 123001.
Abstract: Variability of crop yields is detrimental for food security. Under climate change its amplitude is likely to increase, thus it is essential to understand the underlying causes and mechanisms. Crop models are the primary tool to project future changes in crop yields under climate change. Asystematic overview of drivers and mechanisms of crop yield variability (YV) can thus inform crop model development and facilitate improved understanding of climate change impacts on crop yields. Yet there is a vast body of literature on crop physiology and YV, which makes a prioritization of mechanisms for implementation in models challenging. Therefore this paper takes on a novel approach to systematically mine and organize existing knowledge from the literature. The aim is to identify important mechanisms lacking in models, which can help to set priorities in model improvement. We structure knowledge from the literature in a semi-quantitative network. This network consists of complex interactions between growing conditions, plant physiology and crop yield. We utilize the resulting network structure to assign relative importance to causes of YV and related plant physiological processes. As expected, our findings confirm existing knowledge, in particular on the dominant role of temperature and precipitation, but also highlight other important drivers of YV. More importantly, our method allows for identifying the relevant physiological processes that transmit variability in growing conditions to variability in yield. We can identify explicit targets for the improvement of crop models. The network can additionally guide model development by outlining complex interactions between processes and by easily retrieving quantitative information for each of the 350 interactions. We show the validity of our network method as a structured, consistent and scalable dictionary of literature. The method can easily be applied to many other research fields.
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