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Author |
Van Oijen, M.; Höglind, M. |
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Title |
Toward a Bayesian procedure for using process-based models in plant breeding, with application to ideotype design |
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Journal Article |
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Year |
2016 |
Publication |
Euphytica |
Abbreviated Journal  |
Euphytica |
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Volume |
207 |
Issue |
3 |
Pages |
627-643 |
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Keywords |
BASGRA; cold tolerance; genotype-environment interaction; plant breeding; process-based modelling; yield stability; grassland productivity; timothy regrowth; climate-change; water-deficit; forest models; late blight; leaf-area; calibration; growth; tolerance |
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Abstract |
Process-based grassland models (PBMs) simulate growth and development of vegetation over time. The models tend to have a large number of parameters that represent properties of the plants. To simulate different cultivars of the same species, different parameter values are required. Parameter differences may be interpreted as genetic variation for plant traits. Despite this natural connection between PBMs and plant genetics, there are only few examples of successful use of PBMs in plant breeding. Here we present a new procedure by which PBMs can help design ideotypes, i.e. virtual cultivars that optimally combine properties of existing cultivars. Ideotypes constitute selection targets for breeding. The procedure consists of four steps: (1) Bayesian calibration of model parameters using data from cultivar trials, (2) Estimating genetic variation for parameters from the combination of cultivar-specific calibrated parameter distributions, (3) Identifying parameter combinations that meet breeding objectives, (4) Translating model results to practice, i.e. interpreting parameters in terms of practical selection criteria. We show an application of the procedure to timothy (Phleum pratense L.) as grown in different regions of Norway. |
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2016-10-31 |
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ISSN |
0014-2336 |
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CropM, ft_macsur |
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Call Number |
MA @ admin @ |
Serial |
4820 |
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Author |
Lizaso, J.I.; Ruiz-Rarnos, M.; Rodriguez, L.; Gabaldon-Leal, C.; Oliveira, J.A.; Lorite, I.J.; Sanchez, D.; Garcia, E.; Rodriguez, A. |
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Title |
Impact of high temperatures in maize: Phenology and yield components |
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Journal Article |
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Year |
2018 |
Publication |
Field Crops Research |
Abbreviated Journal |
Field Crops Research |
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Volume |
216 |
Issue |
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Pages |
129-140 |
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Keywords |
Heat stress; Maize; Kernel number; Anthesis, Beta function; Vapor-Pressure Deficit; Heat-Stress; Transpiration Response; Pollen; Viability; Leaf Appearance; Climate-Change; Kernel Number; Grain-Yield; Growth; Plants |
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Abstract |
Heat stress is a main threat to current and future global maize production. Adaptation of maize to future warmer conditions requires improving our understanding of crop responses to elevated temperatures. For this purpose, the same short-season (FAO 300) maize hybrid PR37N01 was grown over three years of field experiments on three contrasting Spanish locations in terms of temperature regime. The information complemented three years of greenhouse experiments with the same hybrid, applying heat treatments at various critical moments of the crop cycle. Crop phenology, growth, grain yield, and yield components were monitored. An optimized beta function improved the calculation of thermal time compared to the linear-cutoff estimator with base and optimum temperatures of 8 and 34 degrees C, respectively. Our results showed that warmer temperatures accelerate development rate resulting in shorter vegetative and reproductive phases (ca. 30 days for the whole cycle). Heat stress did not cause silking delay in relation to anthesis (extended anthesis-silking interval), at least in the range of temperatures (maximum temperature up to 42.9 degrees C in the field and up to 52.5 degrees C in the greenhouse) considered in this study. Our results indicated that maize grain yield is reduced under heat stress mainly via pollen viability that in turn determines kernel number, although a smaller but significant effect of the female component has been also detected. |
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2018-02-19 |
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0378-4290 |
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CropM, ft_macsur |
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MA @ admin @ |
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5190 |
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Author |
De Pascale, S.; Orsini, F.; Caputo, R.; Palermo, M.A.; Barbieri, G.; Maggio, A. |
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Title |
Seasonal and multiannual effects of salinisation on tomato yield and fruit quality |
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Journal Article |
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Year |
2012 |
Publication |
Functional Plant Biology |
Abbreviated Journal |
Functional Plant Biology |
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Volume |
39 |
Issue |
8 |
Pages |
689-698 |
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Keywords |
fruit ions concentration; fruit lipophilic and hydrophilic antioxidant; capacities; leaf water potentials; leaf stomatal conductance; short- and; long-term salinisation; salinity tolerance; water-stress; antioxidant activity; irrigation; growth; plants; soils; carotenoids; responses; crops |
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Abstract |
The effects of short-and long-term salinisation were studied by comparing tomato growth on a soil exposed to one-season salinisation (short term) vs growth on a soil exposed to >20 years salinisation (long term). Remarkable differences were associated to substantial modifications of the soil physical-chemical characteristics in the root zone, including deteriorated structure, reduced infiltration properties and increased pH. Fresh yield, fruit number and fruit weight were similarly affected by short-and long-term salinisation. In contrast, the marketable yield was significantly lower in the long-term salinised soil-a response that was also associated to nutritional imbalance (mainly referred to P and K). As reported for plants growing under oxygen deprivation stress, the antioxidant capacity of the water soluble fraction of salinised tomato fruits was enhanced by short-term salinisation, also. Overall, long-term salinisation may cause physiological imbalances and yield reductions that cannot be solely attributed to hyperosmotic stress and ionic toxicity. Therefore, the ability of plants to cope with nutritional deficiency and withstand high pH and anoxia may be important traits that should be considered to improve plant tolerance to long-term salinised soils. |
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ISSN |
1445-4408 |
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CropM |
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Call Number |
MA @ admin @ |
Serial |
4583 |
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Author |
Semenov, M.A.; Stratonovitch, P.; Alghabari, F.; Gooding, M.J. |
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Title |
Adapting wheat in Europe for climate change |
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Journal Article |
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Year |
2014 |
Publication |
Journal of Cereal Science |
Abbreviated Journal |
J. Ceareal Sci. |
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Volume |
59 |
Issue |
3 |
Pages |
245-256 |
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Keywords |
A, maximum area of flag leaf area; ABA, abscisic acid; CV, coefficient of variation; Crop improvement; Crop modelling; FC, field capacity; GMT, Greenwich mean time; GS, growth stage; Gf, grain filling duration; HI, harvest index; HSP, heat shock protein; Heat and drought tolerance; Impact assessment; LAI, leaf area index; Ph, phylochron; Pp, photoperiod response; Ru, root water uptake; S, duration of leaf senescence; SF, drought stress factor; Sirius; Wheat ideotype |
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Abstract |
Increasing cereal yield is needed to meet the projected increased demand for world food supply of about 70% by 2050. Sirius, a process-based model for wheat, was used to estimate yield potential for wheat ideotypes optimized for future climatic projections for ten wheat growing areas of Europe. It was predicted that the detrimental effect of drought stress on yield would be decreased due to enhanced tailoring of phenology to future weather patterns, and due to genetic improvements in the response of photosynthesis and green leaf duration to water shortage. Yield advances could be made through extending maturation and thereby improve resource capture and partitioning. However the model predicted an increase in frequency of heat stress at meiosis and anthesis. Controlled environment experiments quantify the effects of heat and drought at booting and flowering on grain numbers and potential grain size. A current adaptation of wheat to areas of Europe with hotter and drier summers is a quicker maturation which helps to escape from excessive stress, but results in lower yields. To increase yield potential and to respond to climate change, increased tolerance to heat and drought stress should remain priorities for the genetic improvement of wheat. |
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ISSN |
0733-5210 |
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Review |
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CropM, ft_macsur |
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MA @ admin @ |
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4543 |
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Author |
Mansouri, M.; Dumont, B.; Leemans, V.; Destain, M.-F. |
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Title |
Bayesian methods for predicting LAI and soil water content |
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Journal Article |
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Year |
2014 |
Publication |
Precision Agriculture |
Abbreviated Journal |
Precision Agric. |
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Volume |
15 |
Issue |
2 |
Pages |
184-201 |
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Keywords |
crop model; bayes; data assimilation; extended kalman filtering; particle filtering; variational filtering; leaf-area index; parameter-estimation; crop models; moisture; instruments; management; sensors; state |
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Abstract |
LAI of winter wheat (Triticum aestivum L.) and soil water content of the topsoil (200 mm) and of the subsoil (500 mm) were considered as state variables of a dynamic soil-crop system. This system was assumed to progress according to a Bayesian probabilistic state space model, in which real values of LAI and soil water content were daily introduced in order to correct the model trajectory and reach better future evolution. The chosen crop model was mini STICS which can reduce the computing and execution times while ensuring the robustness of data processing and estimation. To predict simultaneously state variables and model parameters in this non-linear environment, three techniques were used: extended Kalman filtering (EKF), particle filtering (PF), and variational filtering (VF). The significantly improved performance of the VF method when compared to EKF and PF is demonstrated. The variational filter has a low computational complexity and the convergence speed of states and parameters estimation can be adjusted independently. Detailed case studies demonstrated that the root mean square error of the three estimated states (LAI and soil water content of two soil layers) was smaller and that the convergence of all considered parameters was ensured when using VF. Assimilating measurements in a crop model allows accurate prediction of LAI and soil water content at a local scale. As these biophysical properties are key parameters in the crop-plant system characterization, the system has the potential to be used in precision farming to aid farmers and decision makers in developing strategies for site-specific management of inputs, such as fertilizers and water irrigation. |
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ISSN |
1385-2256 |
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CropM, ftnotmacsur |
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MA @ admin @ |
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4629 |
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