Boote, K. J., Porter, C., Jones, J. W., Thorburn, P. J., Kersebaum, K. C., Hoogenboom, G., et al. (2016). Sentinel site data for crop model improvement—definition and characterization. In J. L. Hatfield, & D. Fleisher (Eds.), Improving Modeling Tools to Assess Climate Change Effects on Crop Response. Advances in Agricultural Systems Modeling, 7.
Abstract: Crop models are increasingly being used to assess the impacts of future climate change on production and food security. High quality, site-specific data on weather, soils, management, and cultivar are needed for those model applications. Also important is that model development, evaluation, improvement, and calibration require additional high quality, site-specific measurements on crop yield, growth, phenology, and ancillary traits. We review the evolution of minimum data set requirements for agroecosystem modeling and then describe the characteristics and ranking of sentinel site data needed for crop model improvement, calibration, and application. We in the Agricultural Model Intercomparison and Improvement Project (AgMIP), propose to rank sentinel site data sets as platinum, gold, silver, and copper, based on the degree of true site-specific measurement of weather, soils, management, crop yield, as well as the quality, comprehensiveness, quantity, accuracy, and value. For example, to be ranked platinum, the weather and soil characterization must be measured on-site, and all management inputs must be known. Dataset ranking will be lower for weather measured off-site or soil traits estimated from soil mapping. Ranking also depends on the intended purposes for data use. If the purpose is to improve a crop model for response to water or N, then additional observations are necessary, such as initial soil water, initial soil inorganic N, and plant N uptake during the growing season to be ranked platinum. Rankings are enhanced by presence of multiple treatments and sites. Examples of platinum-, gold-, and silver-quality data sets for model improvement and calibration uses are illustrated.
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Makowski, D., Asseng, S., Ewert, F., Bassu, S., Durand, J. L., Li, T., et al. (2015). A statistical analysis of three ensembles of crop model responses to temperature and CO2 concentration. Agricultural and Forest Meteorology, 214-215, 483–493.
Abstract: Ensembles of process-based crop models are increasingly used to simulate crop growth for scenarios of temperature and/or precipitation changes corresponding to different projections of atmospheric CO2 concentrations. This approach generates large datasets with thousands of simulated crop yield data. Such datasets potentially provide new information but it is difficult to summarize them in a useful way due to their structural complexities. An associated issue is that it is not straightforward to compare crops and to interpolate the results to alternative climate scenarios not initially included in the simulation protocols. Here we demonstrate that statistical models based on random-coefficient regressions are able to emulate ensembles of process-based crop models. An important advantage of the proposed statistical models is that they can interpolate between temperature levels and between CO2 concentration levels, and can thus be used to calculate temperature and [CO2] thresholds leading to yield loss or yield gain, without rerunning the original complex crop models. Our approach is illustrated with three yield datasets simulated by 19 maize models, 26 wheat models, and 13 rice models. Several statistical models are fitted to these datasets, and are then used to analyze the variability of the yield response to [CO2] and temperature. Based on our results, we show that, for wheat, a [CO2] increase is likely to outweigh the negative effect of a temperature increase of +2 degrees C in the considered sites. Compared to wheat, required levels of [CO2] increase are much higher for maize, and intermediate for rice. For all crops, uncertainties in simulating climate change impacts increase more with temperature than with elevated [CO2].
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Rosenzweig, C., Jones, J. W., Hatfield, J. L., Ruane, A. C., Boote, K. J., Thorburn, P., et al. (2013). The Agricultural Model Intercomparison and Improvement Project (AgMIP): Protocols and pilot studies. Agricultural and Forest Meteorology, 170, 166–182.
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Wallach, D., Thorburn, P., Asseng, S., Challinor, A. J., Ewert, F., Jones, J. W., et al. (2016). Estimating model prediction error: Should you treat predictions as fixed or random. Env. Model. Softw., 84, 529–539.
Abstract: Crop models are important tools for impact assessment of climate change, as well as for exploring management options under current climate. It is essential to evaluate the uncertainty associated with predictions of these models. We compare two criteria of prediction error; MSEPfixed, which evaluates mean squared error of prediction for a model with fixed structure, parameters and inputs, and MSEPuncertain(X), which evaluates mean squared error averaged over the distributions of model structure, inputs and parameters. Comparison of model outputs with data can be used to estimate the former. The latter has a squared bias term, which can be estimated using hindcasts, and a model variance term, which can be estimated from a simulation experiment. The separate contributions to MSEPuncertain(X) can be estimated using a random effects ANOVA. It is argued that MSEPuncertain(X) is the more informative uncertainty criterion, because it is specific to each prediction situation.
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Wallach, D., Nissanka, S. P., Karunaratne, A. S., Weerakoon, W. M. W., Thorburn, P. J., Boote, K. J., et al. (2016). Accounting for both parameter and model structure uncertainty in crop model predictions of phenology: A case study on rice. European Journal of Agronomy, .
Abstract: We consider predictions of the impact of climate warming on rice development times in Sri Lanka. The major emphasis is on the uncertainty of the predictions, and in particular on the estimation of mean squared error of prediction. Three contributions to mean squared error are considered. The first is parameter uncertainty that results from model calibration. To take proper account of the complex data structure, generalized least squares is used to estimate the parameters and the variance-covariance matrix of the parameter estimators. The second contribution is model structure uncertainty, which we estimate using two different models. An ANOVA analysis is used to separate the contributions of parameter and model uncertainty to mean squared error. The third contribution is model error, which is estimated using hindcasts. Mean squared error of prediction of time from emergence to maturity, for baseline +2 °C, is estimated as 108 days2, with model error contributing 86 days2, followed by model structure uncertainty which contributes 15 days2 and parameter uncertainty which contributes 7 days2. We also show how prediction uncertainty is reduced if prediction concerns development time averaged over years, or the difference in development time between baseline and warmer temperatures.
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