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Lizaso, J.I.; Ruiz-Ramos, M.; Rodriguez, L.; Gabaldon-Leal, C.; Oliveira, J.A.; Lorite, I.J.; Rodriguez, A.; Maddonni, G.A.; Otegui, M.E. |
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Title |
Modeling the response of maize phenology, kernel set, and yield components to heat stress and heat shock with CSM-IXIM |
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Journal Article |
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Year |
2017 |
Publication |
Field Crops Research |
Abbreviated Journal  |
Field Crops Research |
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Volume |
214 |
Issue |
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Pages |
239-252 |
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Keywords |
Heat stress, Maize; CSM-IXIM; CSM-CERES-maize; Beta function; CERES-MAIZE; DEVELOPMENTAL PROCESSES; TEMPERATURE RESPONSES; CROSS-VALIDATION; GRAIN-SORGHUM; GROWTH; SIMULATION; PLANTS; SENESCENCE; NITROGEN |
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Abstract |
The available evidence suggests that the current increasing trend in global surface temperatures will continue during this century, which will be accompanied by a greater frequency of extreme events. The IPCC has projected that higher temperatures may outscore the known optimal and maximum temperatures for maize. The purpose of this study was to improve the ability of the maize model CSM-IXIM to simulate crop development, growth, and yield under hot conditions, especially with regards to the impact of above-optimal temperatures around anthesis. Field and greenhouse experiments that were performed over three years (2014-2016) using the same short-season hybrid, PR37N01 (FAO 300), provided the data for this work. Maize was sown at a target population density of 5 plants M-2 on two sowing dates in 2014 and 2015 and on one in 2016 at three locations in Spain (northern, central, and southern Spain) with a well-defined thermal gradient. The same hybrid was also sown in two greenhouse chambers with daytime target temperatures of approximately 25 and above 35 degrees C. During the nighttime, the temperature in both chambers was allowed to equilibrate with the outside temperature. The greenhouse treatments consisted of moving 18 plants at selected phenological stages (V4, V9, anthesis, lag phase, early grain filling) from the cool chamber to the hot chamber over a week and then returning the plants back to the cool chamber. An additional control treatment remained in the cool chamber all season, and in 2015 and 2016, one treatment remained permanently in the hot chamber. Two maize models in the Decision Support System for Agrotechnology Transfer (DSSAT) V4.6 were compared, namely CERES and IXIM. The HUM version included additional components that were previously developed to improve the crop N simulation and to incorporate the anthesis-silking interval (ASI). A new thermal time calculation, a heat stress index, the impact of pollen-sterilizing temperatures, and the explicit simulation of male and female flowering as affected by the daily heat conditions were added to IXIM. The phenology simulation in field experiments by IXIM improved substantially. The RMSE for silking and maturity in CERES were 7.9 and 13.7 days, decreasing in DCIM to 2.8 and 7.3 days, respectively. Similarly, the estimated kernel numbers, kernel weight, grain yield and final biomass were always closer to the measurements in HUM than in CERES. The worst simulations were for kernel weight, and for that reason, the differences in grain yield between the models were small (the RMSE in CERES was 1219 kg ha(-1) vs. 1082 kg ha(-1) in IXIM). The greenhouse results also supported the improved estimations of crop development by IXIM (RMSE of 2.6 days) relative to CERES (7.4 days). The impact of the heat treatments on grain yield was consistently overestimated by CERES, while HUM captured the general trend. The new HUM model improved the CERES simulations when elevated temperatures were included in the evaluation data. Additional model testing with measurements from a wider latitudinal range and relevant heat conditions are required. |
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2017-11-24 |
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0378-4290 |
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CropM, ft_macsur |
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MA @ admin @ |
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5180 |
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Author |
Tao, F.; Roetter, R.P.; Palosuo, T.; Diaz-Ambrona, C.G.H.; Ines Minguez, M.; Semenov, M.A.; Kersebaum, K.C.; Nendel, C.; Cammarano, D.; Hoffmann, H.; Ewert, F.; Dambreville, A.; Martre, P.; Rodriguez, L.; Ruiz-Ramos, M.; Gaiser, T.; Hohn, J.G.; Salo, T.; Ferrise, R.; Bindi, M.; Schulman, A.H. |
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Title |
Designing future barley ideotypes using a crop model ensemble |
Type |
Journal Article |
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Year |
2017 |
Publication |
European Journal of Agronomy |
Abbreviated Journal |
Europ. J. Agron. |
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Volume |
82 |
Issue |
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Pages |
144-162 |
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Keywords |
Water-Use Efficiency; Climate-Change; Nitrogen Dynamics; Systems; Simulation; Wheat Cultivars; Grain Weight; Yield; Growth; Fertilization; Adaptation; Adaptation; Breeding; Climate change; Crop simulation models; Impact; Genotype; Genetic traits |
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Abstract |
Climate change and its associated higher frequency and severity of adverse weather events require genotypic adaptation. Process-based ecophysiological modelling offers a powerful means to better target and accelerate development of new crop cultivars. Barley (Hordeum vulgare L) is an important crop throughout the world, and a good model for study of the genetics of stress adaptation because many quantitative trait loci and candidate genes for biotic and abiotic stress tolerance have been identified in it. Here, we developed a new approach to design future crop ideotypes using an ensemble of eight barley simulation models (i.e. APSIM, CropSyst, HERMES, MCWLA, MONICA, SIMPLACE, Sirius Quality, and WOFOST), and applied it to design climate-resilient barley ideotypes for Boreal and Mediterranean climatic zones in Europe. The results showed that specific barley genotypes, represented by sets of cultivar parameters in the crop models, could be promising under future climate change conditions, resulting in increased yields and low inter-annual yield variability. In contrast, other genotypes could result in substantial yield declines. The most favorable climate-zone-specific barley ideotypes were further proposed, having combinations of several key genetic traits in terms of phenology, leaf growth, photosynthesis, drought tolerance, and grain formation. For both Boreal and Mediterranean climatic zones, barley ideotypes under future climatic conditions should have a longer reproductive growing period, lower leaf senescence rate, larger radiation use efficiency or maximum assimilation rate, and higher drought tolerance. Such characteristics can produce substantial positive impacts on yields under contrasting conditions. Moreover, barley ideotypes should have a low photoperiod and high vernalization sensitivity for the Boreal climatic zone; for the Mediterranean, in contrast, it should have a low photoperiod and low vernalization sensitivity. The drought-tolerance trait is more beneficial for the Mediterranean than for the Boreal climatic zone. Our study demonstrates a sound approach to design future barley ideotypes based on an ensemble of well-tested, diverse crop models and on integration of knowledge from multiple disciplines. The robustness of model-aided ideotypes design can be further enhanced by continuously improving crop models and enhancing information exchange between modellers, agro-meteorologists, geneticists, physiologists, and plant breeders. (C) 2016 Elsevier B.V. All rights reserved. |
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2017-01-20 |
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1161-0301 |
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CropM, ft_MACSUR |
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Call Number |
MA @ admin @ |
Serial |
4935 |
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Author |
Sharif, B.; Makowski, D.; Plauborg, F.; Olesen, J.E. |
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Title |
Comparison of regression techniques to predict response of oilseed rape yield to variation in climatic conditions in Denmark |
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Journal Article |
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Year |
2017 |
Publication |
European Journal of Agronomy |
Abbreviated Journal |
Europ. J. Agron. |
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Volume |
82 |
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Pages |
11-20 |
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Keywords |
Winter oilseed rape; Statistical models; Yield; Climate; Regression |
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Abstract |
Highlights • Regularization techniques for regression outperformed the classical regression techniques in predicting crop yields. • Different regression techniques with similar prediction accuracy showed different responses of major climatic variables to crop yield. • The regression models showed some responses of crop yield to climatic conditions that is mostly absent in process based crop models. Abstract Statistical regression models represent alternatives to process-based dynamic models for predicting the response of crop yields to variation in climatic conditions. Regression models can be used to quantify the effect of change in temperature and precipitation on yields. However, it is difficult to identify the most relevant input variables that should be included in regression models due to the high number of candidate variables and to their correlations. This paper compares several regression techniques for modeling response of winter oilseed rape yield to a high number of correlated input variables. Several statistical regression methods were fitted to a dataset including 689 observations of winter oilseed rape yield from replicated field experiments conducted in 239 sites in Denmark, covering nearly all regions of the country from 1992 to 2013. Regression methods were compared by cross-validation. The regression methods leading to the most accurate yield predictions were Lasso and Elastic Net, and the least accurate methods were ordinary least squares and stepwise regression. Partial least squares and ridge regression methods gave intermediate results. The estimated relative yield change for a +1°C temperature increase during flowering was estimated to range between 0 and +6 %, depending on choice of regression method. Precipitation was found to have an adverse effect on yield during autumn and winter. It was estimated that an increase in precipitation of +1 mm/day would result in a relative yield change ranging from 0 to −4 %. Soil type was also important for crop yields with lower yields on sandy soils compared to loamy soils. Later sowing was found to result in increased crop yield. The estimated effect of climate on yield was highly sensitive to the chosen regression method. Regression models showing similar performance led in some cases to different conclusions with respect to effect of temperature and precipitation. Hence, it is recommended to apply an ensemble of regression models, in order to account for the sensitivity of the data driven models for projecting crop yield under climate change. |
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1161-0301 |
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CropM, ft_macsur |
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MA @ admin @ |
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4966 |
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Author |
Zhang, S.; Tao, F.; Zhang, Z. |
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Title |
Uncertainty from model structure is larger than that from model parameters in simulating rice phenology in China |
Type |
Journal Article |
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Year |
2017 |
Publication |
European Journal of Agronomy |
Abbreviated Journal |
Europ. J. Agron. |
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Volume |
87 |
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30-39 |
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Keywords |
Crop model, Extreme weather, Impacts, Rice development rate, Uncertainty; Climate-Change; Growth Duration; Crop Model; Ceres-Rice; Wheat; Temperature; Impact; Yield; Optimization; Performance |
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Rice models have been widely used in simulating and predicting rice phenology in contrasting climate zones, however the uncertainties from model structure (different equations or models) and/or model parameters were rarely investigated. Here, five rice phenological models/modules (Le., CERES-Rice, ORYZA2000, RCM, Beta Model and SIMRIW) were applied to simulate rice phenology at 23 experimental stations from 1992 to 2009 in two major rice cultivation regions of China: the northeastern China and the southwestern China. To investigate the uncertainties from model biophysical parameters, each model was run with randomly perturbed 50 sets of parameters. The results showed that the median of ensemble simulations were better than the simulation by most models. Models couldn’t simulate well in some specific years despite of parameters optimization, suggesting model structure limit model performance in some cases. The models adopting accumulative thermal time function (e.g., CERES-Rice and ORYZA2000) had better performance in the southwestern China, in contrast, those adopting exponential function (e.g., Beta model and RCM model) had better performance in the northeastern China. In northeastern China, the contribution of model structure and model parameters to model total variance was, respectively, about 55.90% and 44.10% in simulating heading date, and about 75.43% and 24.57% in simulating maturity date. In the southwestern China, the contribution of model structure and model parameters to model total variance was, respectively, about 79.97% and 27.03% in simulating heading date, about 92.15% and 7.85% in simulating maturity date. Uncertainty from model structure was the most relevant source. The results highlight that the temperature response functions of rice development rate under extreme climate conditions should be improved based on environment-controlled experimental data. |
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2017-08-07 |
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1161-0301 |
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CropM, ft_macsur |
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Call Number |
MA @ admin @ |
Serial |
5170 |
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Author |
Makowski, D. |
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Title |
A simple Bayesian method for adjusting ensemble of crop model outputs to yield observations |
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Journal Article |
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Year |
2017 |
Publication |
European Journal of Agronomy |
Abbreviated Journal |
Europ. J. Agron. |
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Volume |
88 |
Issue |
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Pages |
76-83 |
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Keywords |
Bayesian method; Climate change; Ensemble modelling; Uncertainty; Yield; Linear-Approach; Climate-Change; CO2 |
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Abstract |
Multi-model forecasting has drawn some attention in crop science for evaluating effect of climate change on crop yields. The principle is to run several individual process-based crop models under several climate scenarios in order to generate ensembles of output values. This paper describes a simple Bayesian method – called Bayes linear method- for updating ensemble of crop model outputs using yield observations. The principle is to summarize the ensemble of crop model outputs by its mean and variance, and then to adjust these two quantities to yield observations in order to reduce uncertainty. The adjusted mean and variance combine two sources of information, i.e., the ensemble of crop model outputs and the observations. Interestingly, with this method, observations collected under a given climate scenario can be used to adjust mean and variance of the model ensemble under a different scenario. Another advantage of the proposed method is that it does not rely on a separate calibration of each individual crop model. The uncertainty reduction resulting from the adjustment of an ensemble of crop models to observations was assessed in a numerical application. The implementation of the Bayes linear method systematically reduced uncertainty, but the results showed the effectiveness of this method varied in function of several factors, especially the accuracy of the yield observation, and the covariance between the crop model output and the observation. (C) 2015 Elsevier B.V. All rights reserved. |
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2017-08-07 |
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1161-0301 |
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CropM, ft_macsur |
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Call Number |
MA @ admin @ |
Serial |
5171 |
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