| |
Records |
Links |
|
Author |
Schauberger, B.; Rolinski, S.; Müller, C. |
|
| |
Title |
A network-based approach for semi-quantitative knowledge mining and its application to yield variability |
Type |
Journal Article |
| |
Year |
2016 |
Publication |
Environmental Research Letters |
Abbreviated Journal  |
Environ. Res. Lett. |
|
| |
Volume |
11 |
Issue |
12 |
Pages |
123001 |
|
| |
Keywords |
yield variability; crop models; interaction network; plant process; wheat; maize; rice; Global Food Security; Climate-Change; Crop Production; Stress Tolerance; Wheat Yields; Heat-Stress; Temperature Variability; Environmental-Factors; United-States; Elevated CO2 |
|
| |
Abstract |
Variability of crop yields is detrimental for food security. Under climate change its amplitude is likely to increase, thus it is essential to understand the underlying causes and mechanisms. Crop models are the primary tool to project future changes in crop yields under climate change. Asystematic overview of drivers and mechanisms of crop yield variability (YV) can thus inform crop model development and facilitate improved understanding of climate change impacts on crop yields. Yet there is a vast body of literature on crop physiology and YV, which makes a prioritization of mechanisms for implementation in models challenging. Therefore this paper takes on a novel approach to systematically mine and organize existing knowledge from the literature. The aim is to identify important mechanisms lacking in models, which can help to set priorities in model improvement. We structure knowledge from the literature in a semi-quantitative network. This network consists of complex interactions between growing conditions, plant physiology and crop yield. We utilize the resulting network structure to assign relative importance to causes of YV and related plant physiological processes. As expected, our findings confirm existing knowledge, in particular on the dominant role of temperature and precipitation, but also highlight other important drivers of YV. More importantly, our method allows for identifying the relevant physiological processes that transmit variability in growing conditions to variability in yield. We can identify explicit targets for the improvement of crop models. The network can additionally guide model development by outlining complex interactions between processes and by easily retrieving quantitative information for each of the 350 interactions. We show the validity of our network method as a structured, consistent and scalable dictionary of literature. The method can easily be applied to many other research fields. |
|
| |
Address |
2017-04-07 |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
|
Place of Publication |
|
Editor |
|
|
| |
Language |
English |
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
1748-9326 |
ISBN |
|
Medium |
Review |
|
| |
Area |
|
Expedition |
|
Conference |
|
|
| |
Notes |
CropM, ft_macsur |
Approved |
no |
|
| |
Call Number |
MA @ admin @ |
Serial |
4942 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Knox, J.; Daccache, A.; Hess, T.; Haro, D. |
|
| |
Title |
Meta-analysis of climate impacts and uncertainty on crop yields in Europe |
Type |
Journal Article |
| |
Year |
2016 |
Publication |
Environmental Research Letters |
Abbreviated Journal |
Environ. Res. Lett. |
|
| |
Volume |
11 |
Issue |
|
Pages |
113004 |
|
| |
Keywords |
|
|
| |
Abstract |
Future changes in temperature, rainfall and soil moisture could threaten agricultural land use and crop productivity in Europe, with major consequences for food security. We assessed the projected impacts of climate change on the yield of seven major crop types (viz wheat, barley, maize, potato, sugar beet, rice and rye) grown in Europe using a systematic review (SR) and meta-analysis of data reported in 41 original publications from an initial screening of 1748 studies. Our approach adopted an established SR procedure developed by the Centre for Evidence Based Conservation constrained by inclusion criteria and defined methods for literature searches, data extraction, meta-analysis and synthesis. Whilst similar studies exist to assess climate impacts on crop yield in Africa and South Asia, surprisingly, no comparable synthesis has been undertaken for Europe. Based on the reported results (n = 729) we show that the projected change in average yield in Europe for the seven crops by the 2050s is +8%. For wheat and sugar beet, average yield changes of +14% and +15% are projected, respectively. There were strong regional differences with crop impacts in northern Europe being higher (+14%) and more variable compared to central (+6%) and southern (+5) Europe. Maize is projected to suffer the largest negative mean change in southern Europe (−11%). Evidence of climate impacts on yield was extensive for wheat, maize, sugar beet and potato, but very limited for barley, rice and rye. The implications for supporting climate adaptation policy and informing climate impacts crop science research in Europe are discussed. |
|
| |
Address |
|
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
|
Place of Publication |
|
Editor |
|
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
1748-9326 |
ISBN |
|
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
|
|
| |
Notes |
CropM, TradeM, ft_macsur |
Approved |
no |
|
| |
Call Number |
MA @ admin @ |
Serial |
5011 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Van Oijen, M.; Höglind, M. |
|
| |
Title |
Toward a Bayesian procedure for using process-based models in plant breeding, with application to ideotype design |
Type |
Journal Article |
| |
Year |
2016 |
Publication |
Euphytica |
Abbreviated Journal |
Euphytica |
|
| |
Volume |
207 |
Issue |
3 |
Pages |
627-643 |
|
| |
Keywords |
BASGRA; cold tolerance; genotype-environment interaction; plant breeding; process-based modelling; yield stability; grassland productivity; timothy regrowth; climate-change; water-deficit; forest models; late blight; leaf-area; calibration; growth; tolerance |
|
| |
Abstract |
Process-based grassland models (PBMs) simulate growth and development of vegetation over time. The models tend to have a large number of parameters that represent properties of the plants. To simulate different cultivars of the same species, different parameter values are required. Parameter differences may be interpreted as genetic variation for plant traits. Despite this natural connection between PBMs and plant genetics, there are only few examples of successful use of PBMs in plant breeding. Here we present a new procedure by which PBMs can help design ideotypes, i.e. virtual cultivars that optimally combine properties of existing cultivars. Ideotypes constitute selection targets for breeding. The procedure consists of four steps: (1) Bayesian calibration of model parameters using data from cultivar trials, (2) Estimating genetic variation for parameters from the combination of cultivar-specific calibrated parameter distributions, (3) Identifying parameter combinations that meet breeding objectives, (4) Translating model results to practice, i.e. interpreting parameters in terms of practical selection criteria. We show an application of the procedure to timothy (Phleum pratense L.) as grown in different regions of Norway. |
|
| |
Address |
2016-10-31 |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
|
Place of Publication |
|
Editor |
|
|
| |
Language |
English |
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
0014-2336 |
ISBN |
|
Medium |
Article |
|
| |
Area |
|
Expedition |
|
Conference |
|
|
| |
Notes |
CropM, ft_macsur |
Approved |
no |
|
| |
Call Number |
MA @ admin @ |
Serial |
4820 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Savary, S.; Jouanin, C.; Félix, I.; Gourdain, E.; Piraux, F.; Brun, F.; Willocquet, L. |
|
| |
Title |
Assessing plant health in a network of experiments on hardy winter wheat varieties in France: patterns of disease-climate associations |
Type |
Journal Article |
| |
Year |
2016 |
Publication |
European Journal of Plant Pathology |
Abbreviated Journal |
Eur. J. Plant Pathol. |
|
| |
Volume |
146 |
Issue |
|
Pages |
741-755 |
|
| |
Keywords |
Puccinia triticina; Puccinia striiformis; Fusarium graminearum; Fusarium culmorum; Fusarium avenaceum; Blumeria graminis; Zymoseptoria tritici; Categorical data; Risk factor; Multiple pathosystem; Correspondence analysis; Logistic regression |
|
| |
Abstract |
A data set generated by a multi-year (2003–2010) and multi-site network of experiments on winter wheat varieties grown at different levels of crop management is analysed in order to assess the importance of climate on the variability of wheat health. Wheat health is represented by the multiple pathosystem involving five components: leaf rust, yellow rust, fusarium head blight, powdery mildew, and septoria tritici blotch. An overall framework of associations between multiple diseases and climate variables is developed. This framework involves disease levels in a binary form (i.e. epidemic vs. non-epidemic) and synthesis variables accounting for climate over spring and early summer. The multiple disease-climate pattern of associations of this framework conforms to disease-specific knowledge of climate effects on the components of the pathosystem. It also concurs with a (climate-based) risk factor approach to wheat diseases. This report emphasizes the value of large scale data in crop health assessment and the usefulness of a risk factor approach for both tactical and strategic decisions for crop health management. |
|
| |
Address |
|
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
|
Place of Publication |
|
Editor |
|
|
| |
Language |
English |
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
0929-1873 1573-8469 |
ISBN |
|
Medium |
|
|
| |
Area |
CropM |
Expedition |
|
Conference |
|
|
| |
Notes |
CropMwp;wos; ftnot_macsur; |
Approved |
no |
|
| |
Call Number |
MA @ admin @ |
Serial |
4755 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Stefańczyk, E.; Sobkowiak, S.; Brylińska, M.; Śliwka, J. |
|
| |
Title |
Diversity of Fusarium spp. associated with dry rot of potato tubers in Poland |
Type |
Journal Article |
| |
Year |
2016 |
Publication |
European Journal of Plant Pathology |
Abbreviated Journal |
Eur. J. Plant Pathol. |
|
| |
Volume |
|
Issue |
|
Pages |
|
|
| |
Keywords |
ITS; mycotoxin; pathogenicity; Solanum tuberosum; tef-1α; β-tubulin; sequence data; Trichothecenes; identification; fungus; pathogenicity; temperature; sensitivity; zearalenone; strains; disease |
|
| |
Abstract |
Fusarium spp. belong to the division Ascomycota and cause important plant diseases; these fungi may contaminate food products with mycotoxins, endangering human and animal health. Several Fusarium spp. have been associated with potato dry rot. The most frequent and devastating of these species are F. sambucinum, F. solani and F. oxysporum, depending on the geographic location and the season. Samples of potato tubers with dry rot symptoms were collected, and their putative fungal isolates were identified as Fusarium species using partial nucleotide sequences of the internal transcribed spacer, translation elongation factor 1-α and β-tubulin genes. Among 149 isolates, 12 species were identified. F. oxysporum was the most frequent (45 % of the isolates), followed by F. avenaceum (12.1 %), F. solani (10.7 %) and F. sambucinum (7.4 %). Phylogenetic analyses confirmed the species identifications and revealed a high diversity of F. solani and a low diversity of F. oxysporum. Potential producers of zearalenone and trichothecenes were identified within the obtained isolates using PCR markers. Isolates that were pathogenic to potatoes in laboratory tests were found in four species: F. sambucinum, F. avenaceum, F. culmorum, and F. graminearum. The effects of increased temperature and mixed inoculum on the pathogenicities of chosen species were evaluated. This study adds 434 potato-derived Fusarium sequences to the NCBI GenBank database and demonstrates that the list of Fusarium species and mycotoxins present in potato tubers may be richer than previously believed, regardless of whether these species cause dry rot or live as saprophytes. |
|
| |
Address |
|
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
|
Place of Publication |
|
Editor |
|
|
| |
Language |
English |
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
0929-1873 1573-8469 |
ISBN |
|
Medium |
Article |
|
| |
Area |
|
Expedition |
|
Conference |
|
|
| |
Notes |
CropM, ft_macsur |
Approved |
no |
|
| |
Call Number |
MA @ admin @ |
Serial |
4721 |
|
| Permanent link to this record |
