De Swaef, T., Bellocchi, G., Aper, J., Lootens, P., & Roldan-Ruiz, I. (2019). Use of identifiability analysis in designing phenotyping experiments for modelling forage production and quality. J. Experim. Bot., 70(9), 2587–2604.
Abstract: Agricultural systems models are complex and tend to be over-parameterized with respect to observational datasets. Practical identifiability analysis based on local sensitivity analysis has proved effective in investigating identifiable parameter sets in environmental models, but has not been applied to agricultural systems models. Here, we demonstrate that identifiability analysis improves experimental design to ensure independent parameter estimation for yield and quality outputs of a complex grassland model. The Pasture Simulation model (PaSim) was used to demonstrate the effectiveness of practical identifiability analysis in designing experiments and measurement protocols within phe-notyping experiments with perennial ryegrass. Virtual experiments were designed combining three factors: frequency of measurements, duration of the experiment. and location of trials. Our results demonstrate that (i) PaSim provides sufficient detail in terms of simulating biomass yield and quality of perennial ryegrass for use in breeding, (ii) typical breeding trials are insufficient to parameterize all influential parameters, (iii) the frequency of measurements is more important than the number of growing seasons to improve the identifiability of PaSim parameters, and (iv) identifiability analysis provides a sound approach for optimizing the design of multi-location trials. Practical identifiability analysis can play an important role in ensuring proper exploitation of phenotypic data and cost-effective multi-location experimental designs. Considering the growing importance of simulation models, this study supports the design of experiments and measurement protocols in the phenotyping networks that have recently been organized.
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Siebert, S., Ewert, F., Rezaei, E. E., Kage, H., & Grass, R. (2014). Impact of heat stress on crop yield-on the importance of considering canopy temperature. Environ. Res. Lett., 9(4).
Abstract: Increasing crop productivity while simultaneously reducing the environmental footprint of crop production is considered a major challenge for the coming decades. Even short episodes of heat stress can reduce crop yield considerably causing low resource use efficiency. Studies on the impact of heat stress on crop yields over larger regions generally rely on temperatures measured by standard weather stations at 2 m height. Canopy temperatures measured in this study in field plots of rye were up to 7 degrees C higher than air temperature measured at typical weather station height with the differences in temperatures controlled by soil moisture contents. Relationships between heat stress and grain number derived from controlled environment studies were only confirmed under field conditions when canopy temperature was used to calculate stress thermal time. By using hourly mean temperatures measured by 78 weather stations located across Germany for the period 1994-2009 it is estimated, that mean yield declines in wheat due to heat stress during flowering were 0.7% when temperatures are measured at 2 m height, but yield declines increase to 22% for temperatures measured at the ground. These results suggest that canopy temperature should be simulated or estimated to reduce uncertainty in assessing heat stress impacts on crop yield.
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