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Author |
Van Oijen, M.; Höglind, M. |
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Title |
Toward a Bayesian procedure for using process-based models in plant breeding, with application to ideotype design |
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Journal Article |
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Year |
2016 |
Publication |
Euphytica |
Abbreviated Journal |
Euphytica |
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Volume |
207 |
Issue |
3 |
Pages |
627-643 |
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Keywords |
BASGRA; cold tolerance; genotype-environment interaction; plant breeding; process-based modelling; yield stability; grassland productivity; timothy regrowth; climate-change; water-deficit; forest models; late blight; leaf-area; calibration; growth; tolerance |
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Abstract |
Process-based grassland models (PBMs) simulate growth and development of vegetation over time. The models tend to have a large number of parameters that represent properties of the plants. To simulate different cultivars of the same species, different parameter values are required. Parameter differences may be interpreted as genetic variation for plant traits. Despite this natural connection between PBMs and plant genetics, there are only few examples of successful use of PBMs in plant breeding. Here we present a new procedure by which PBMs can help design ideotypes, i.e. virtual cultivars that optimally combine properties of existing cultivars. Ideotypes constitute selection targets for breeding. The procedure consists of four steps: (1) Bayesian calibration of model parameters using data from cultivar trials, (2) Estimating genetic variation for parameters from the combination of cultivar-specific calibrated parameter distributions, (3) Identifying parameter combinations that meet breeding objectives, (4) Translating model results to practice, i.e. interpreting parameters in terms of practical selection criteria. We show an application of the procedure to timothy (Phleum pratense L.) as grown in different regions of Norway. |
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2016-10-31 |
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0014-2336 |
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CropM, ft_macsur |
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MA @ admin @ |
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4820 |
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Author |
Kraus, D.; Weller, S.; Klatt, S.; Haas, E.; Wassmann, R.; Kiese, R.; Butterbach-Bahl, K. |
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Title |
A new LandscapeDNDC biogeochemical module to predict CH4 and N2O emissions from lowland rice and upland cropping systems |
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Journal Article |
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Year |
2015 |
Publication |
Plant and Soil |
Abbreviated Journal |
Plant Soil |
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Volume |
386 |
Issue |
1-2 |
Pages |
125-149 |
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Keywords |
methane; nitrous oxide; paddy rice; maize; model; nitrous-oxide emissions; process-based model; methane transport capacity; process-oriented model; pnet-n-dndc; forest soils; paddy soils; sensitivity-analysis; residue management; organic-matter |
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Abstract |
Replacing paddy rice by upland systems such as maize cultivation is an on-going trend in SE Asia caused by increasing water scarcity and higher demand for meat. How such land management changes will feedback on soil C and N cycles and soil greenhouse gas emissions is not well understood at present. A new LandscapeDNDC biogeochemical module was developed that allows the effect of land management changes on soil C and N cycle to be simulated. The new module is applied in combination with further modules simulating microclimate and crop growth and evaluated against observations from field experiments. The model simulations agree well with observed dynamics of CH (4) emissions in paddy rice depending on changes in climatic conditions and agricultural management. Magnitude and peak emission periods of N (2) O from maize cultivation are simulated correctly, though there are still deficits in reproducing day-to-day dynamics. These shortcomings are most likely related to simulated soil hydrology and may only be resolved if LandscapeDNDC is coupled to more complex hydrological models. LandscapeDNDC allows for simulation of changing land management practices in SE Asia. The possibility to couple LandscapeDNDC to more complex hydrological models is a feature needed to better understand related effects on soil-atmosphere-hydrosphere interactions. |
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0032-079x |
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CropM, ft_macsur |
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MA @ admin @ |
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4530 |
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Dietrich, J.P.; Schmitz, C.; Lotze-Campen, H.; Popp, A.; Muller, C. |
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Title |
Forecasting technological change in agriculture-An endogenous implementation in a global, and use model |
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Journal Article |
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Year |
2014 |
Publication |
Technological Forecasting and Social Change |
Abbreviated Journal |
Technological Forecasting and Social Change |
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81 |
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236-249 |
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Technological change; Land use; Agricultural productivity; Land use; intensity; Research and development; land-use; research expenditures; productivity growth; impact; deforestation; forest; yield; Business & Economics; Public Administration |
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Technological change in agriculture plays a decisive role for meeting future demands for agricultural goods. However, up to now, agricultural sector models and models on land use change have used technological change as an exogenous input due to various information and data deficiencies. This paper provides a first attempt towards an endogenous implementation based on a measure of agricultural land use intensity. We relate this measure to empirical data on investments in technological change. Our estimated yield elasticity with respect to research investments is 029 and production costs per area increase linearly with an increasing yield level. Implemented in the global land use model MAgPIE (”Model of Agricultural Production and its Impact on the Environment”) this approach provides estimates of future yield growth. Highest future yield increases are required in Sub-Saharan Africa, the Middle East and South Asia. Our validation with FAO data for the period 1995-2005 indicates that the model behavior is in line with observations. By comparing two scenarios on forest conservation we show that protecting sensitive forest areas in the future is possible but requires substantial investments into technological change. (C) 2013 Elsevier Inc. All rights reserved. |
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2016-10-31 |
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0040-1625 |
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CropM |
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Call Number |
MA @ admin @ |
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4789 |
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Author |
Dietrich, J.P.; Schmitz, C.; Lotze-Campen, H.; Popp, A.; Müller, C. |
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Title |
Forecasting technological change in agriculture—An endogenous implementation in a global land use model |
Type |
Journal Article |
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Year |
2014 |
Publication |
Technological Forecasting and Social Change |
Abbreviated Journal |
Technological Forecasting and Social Change |
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Volume |
81 |
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Pages |
236-249 |
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Keywords |
Technological change; Land use; Agricultural productivity; Land use intensity; Research and development; land-use; research expenditures; productivity growth; impact; deforestation; forest; yield; Business & Economics; Public Administration |
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► Endogenous technological change in an economic land use model ► Estimation of yield elasticity with respect to investments in technological change ► Projections of future agricultural productivity rates ► Validation with observed data and historic trends ► Trade-off between required technological change and forest protection objectives Technological change in agriculture plays a decisive role for meeting future demands for agricultural goods. However, up to now, agricultural sector models and models on land use change have used technological change as an exogenous input due to various information and data deficiencies. This paper provides a first attempt towards an endogenous implementation based on a measure of agricultural land use intensity. We relate this measure to empirical data on investments in technological change. Our estimated yield elasticity with respect to research investments is 0.29 and production costs per area increase linearly with an increasing yield level. Implemented in the global land use model MAgPIE (“Model of Agricultural Production and its Impact on the Environment”) this approach provides estimates of future yield growth. Highest future yield increases are required in Sub-Saharan Africa, the Middle East and South Asia. Our validation with FAO data for the period 1995–2005 indicates that the model behavior is in line with observations. By comparing two scenarios on forest conservation we show that protecting sensitive forest areas in the future is possible but requires substantial investments into technological change. |
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0040-1625 |
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CropM |
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Call Number |
MA @ admin @ |
Serial |
4518 |
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Author |
Francone, C.; Katul, G.G.; Cassardo, C.; Richiardone, R. |
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Title |
Turbulent transport efficiency and the ejection-sweep motion for momentum and heat on sloping terrain covered with vineyards |
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Journal Article |
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Year |
2012 |
Publication |
Agricultural and Forest Meteorology |
Abbreviated Journal |
Agricultural and Forest Meteorology |
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162-163 |
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98-107 |
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Keywords |
coherent motion; cumulant expansions; heat and momentum transfer; sloping terrain; vineyards; planar fit method; boundary-layers; reynolds stress; dense canopies; plant canopies; flow; fluxes; forest; fields; hills |
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In boundary layer flows, it is now recognized that the net momentum and mass exchange rates are dominated by the statistical properties of ejecting and sweeping motion often linked to the presence of coherent turbulent structures. Over vineyards, three main factors impact the transport properties of such coherent motion: presence of sloping terrain, variations in leaf area index (LAI) during the growing season, and thermal stratification. The effect of these factors on momentum and heat transport is explored for three vineyard sites situated on different slopes. All three sites experience similar seasonal variation in LAI and mean wind conditions. The analysis is carried out using a conventional quadrant analysis technique and is tested against two models approximating the joint probability density function (JPDF) of the flow variables. It is demonstrated that a Gaussian JPDF explains much of the updraft and downdraft statistical contributions to heat and momentum transport efficiencies for all three sites. An incomplete or truncated third-order cumulant expansion method (ICEM) of the JPDF that retains only the mixed moments and ignores the skewness contributions describes well all the key properties of ejections and sweeps for all slopes, LAI, and stability classes. The implication of these findings for diagnosing potential failures of gradient-diffusion theory over complex terrain is discussed. Because only lower order moments are needed to describe the main characteristics of the JPDF, the use of the Moving Equilibrium Hypothesis (MEH) to predict these moments from the locally measured sensible heat flux and friction velocity is explored. Provided the planar fit coordinate transformation is applied to the data, the MEH can describe these statistical moments at all three sites regardless of terrain slopes and LAI values. (C) 2012 Elsevier B.V. All rights reserved. |
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0168-1923 |
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CropM |
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MA @ admin @ |
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4471 |
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